Alumni by Practicum Location
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Aksamija, Zlatan | 2009 | Fischer, Paul | Parallel Implementation of Charge and Thermal Transport Simulation in Carbon Nanotubes |
| Baraldi, Robert | 2020 | Leyffer, Sven | Guiding the Alternating Direction Method of Multipliers with Filters |
| Bardhan, Jaydeep | 2003 | More, Jorge | Developing a Full-scale Implementation of the Hessian-implicit Primal-dual Method |
| Barry, William | 1996 | Plassmann, Paul | Implementation of Von Mises plasticity in SUMAA3D - a scalable unstructured mesh algorithms and applications package |
| Bender, Jason | 2012 | Klippenstein, Stephen | p3calc: An efficient tool for calculating properties of potential energy surfaces for chemical kinetics |
| Blau, Samuel | 2014 | Hammond, Jeff | Massively Parallelized Equation-Of-Motion Coupled Cluster Singles and Doubles (EOMCCSD) for Excited State Characterization |
| Brorsen, Kurt | 2011 | Fletcher, Graham | Fragment molecular orbital molecular dynamics on the BlueGene/P |
| Bunch, Paul | 1996 | Wright, Stephen | A Simplex Based Primal-Dual Algorithm for Finding a Perfect Two-Matching in an Undirected Graph |
| Carlson, Kent | 1992 | Gropp, William | Performance Optimization and Parallelization of FANS-3D |
| Castle, Sarah | 2017 | Munson, Todd | Untitled |
| Costello, John | 1999 | Fischer, Paul | Investigation of the suitability of WENO schemes for the Rayleigh-Taylor instability |
| Crabb, Emily | 2017 | Heinonen, Olle | Computational Calculations of the Effects of Defects on HfO2 Properties |
| Czyzyk, Joseph | 1992 | Wright, Stephen | Untitled |
| Davis, Marc | 2022 | Kettimuthu, Rajkumar | Mapping Circuits for Distributed Quantum Computing by Graph Partitioning |
| Degleris, Anthony | 2022 | Schanen, Michel | Almost Indirect Methods for Constrained Optimization on the GPU |
| Dsilva, Carmeline | 2012 | Anitescu, Mihai | Molecular Dynamics Simulations for Extracting Phase Field Model Parameters |
| Elliott, Sarah | 2019 | Klippenstein, Stephen | Untitled |
| Elliott, Sarah | 2018 | Klippenstein, Stephen | Automated Thermochemistry and Kinetics for Combustion |
| Elliott, Sarah | 2017 | Klippenstein, Stephen | Automated Thermochemistry for Combustion |
| Emmons, Scott | 2021 | Balaprakash, Prasanna | Reinforcement Learning for Retrosynthetic Pathway Planning |
| Epperly, Thomas | 1992 | Griwank, Andreas | Untitled |
| Fidkowski, Krzysztof | 2004 | Fischer, Paul | A Discontinuous Galerkin Method for the Incompressible Navier-Stokes Equations on Structured Meshes. |
| Fidkowski, Piotr | 2010 | Balaji, Pavan | Investigating Hybrid Programming through Solid Mechanics |
| Gawlik, Evan | 2011 | Munson, Todd | A Linearly Constrained Augmented Lagrangian Method for PDE-Constrained Optimization |
| Goldmints, Larisa | 1998 | Canfield, Thomas | Developing the Beam Element for Finite Element System Using Absolute Nodal Coordinate Formulation |
| Horner, Daniel | 2002 | Fischer, Paul | Krylov Based Exponential Propagators |
| Ivey, Christopher | 2012 | Balakrishnan, Ramesh | Parallelization and optimization of lattice-Boltzmann method |
| Jovanovic, Nickolas | 1993 | Gropp, William | Untitled |
| Katz, Richard | 2003 | Smith, Barry | Non-newtonian dynamics and thermal structure in subduction zones: applying the Portable Extensible Toolkit for Scientific Computing (PETSc) to a highly non-linear problem in CFD |
| Kelley, Morgan | 2018 | Leyffer, Sven | Optimization under uncertainty using chance constraints |
| Kent, Carson | 2017 | Leyffer, Sven | Nonlinear Robust Optimization |
| King, Kathleen | 2009 | Leyffer, Sven | Approximate Dynamic Programing Models of Public Health Emergency Response |
| Krongauz, Yury | 1994 | Plassmann, Paul | Untitled |
| Lockwood, Brian | 2010 | Anitescu, Mihai | Universal Gradient Enhanced Kriging Methods for Surrogate Modeling in Nuclear Engineering |
| Lopez, Jesse | 2013 | Brown, Jed | Enhancing scalability of the coastal ocean model SELFE |
| Loriaux, Paul | 2009 | White, Kevin | Genome wide analysis of epigenetic features during development of Drosophila melanogaster. |
| Ludwig, Thomas | 2018 | de Pablo, Juan | Calculation of free energy profiles for reactions on metal surfaces using advanced sampling methods |
| Matthews, Devin | 2011 | Hammond, Jeff | Algorithms for Local and Parallel Structured Tensor Contractions |
| Moses, William | 2021 | Doerfert, Johannes | Compiler Abstractions and Transformations for High Performance Parallel Computing |
| Ng, Pauline | 2001 | Maltsev, Natalia | Variation in Metabolic Pathways |
| Ozog, David | 2014 | Siegel, Andrew | Performance Analysis of Full-Core Reactor Simulations on the Xeon Phi Architecture |
| Pelzer, Kenley | 2013 | Darling, Seth | Applying DFT to the study of charge density effects in fullerene semiconductors |
| Pelzer, Kenley | 2011 | Klippenstein, Stephen | Conserving angular momentum in the master equation |
| Perez Jr, Danilo | 2022 | Ramanathan, Arvind | Machine learning-driven multiscale modeling of genomic evolution of SARS-CoV-2 |
| Plotkin, David | 2014 | Jacob, Robert | High Resolution Modeling of Tropical Cyclones |
| Rainey, Emma | 2005 | Knepley, Matthew | Finite element model of mantle convection in icy satellites including grain size-dependent viscosity |
| Rangel DaCosta, Luis | 2023 | Benali, Anouar | Implementation of Selected Configuration Interaction Methods for Molecules and Solids with Integral-Driven Computations for Exascale Calculations |
| Rangel DaCosta, Luis | 2022 | Benali, Anouar | Spectral Density Calculations for Solid Materials using Selected Configuration Interaction |
| Rivera, Nicholas | 2018 | Darancet, Pierre | Phonon bottlenecks in low dimensional materials |
| Sahu, Amaresh | 2018 | Smith, Barry | Using PETSc to parallelize finite element simulations of arbitrarily curved and deforming surfaces |
| Salcedo, Andres | 2017 | Habib, Salman | Halo Occupation Distribution Modeling of RedMagic Galaxies |
| Schofield, Samuel | 2002 | Fischer, Paul | Sediment Particle Dynamics |
| Solomonik, Edgar | 2011 | Hammond, Jeff | A framework for parallel symmetric tensor contractions |
| Stine, Andrew | 2014 | Henry, Christopher | Metabolic Modeling of Trophic Interactions in Microbial Communities |
| Stripling, Hayes | 2011 | Anitescu, Mihai | Investigation of Scalable Adjoint Frameworks for Multi-physics Nuclear Reactor Simulations |
| Sullivan, James | 2019 | Habib, Salman | Neutrinos in HACC - Reducing noise in cosmological N-body simulations with neutrino particles |
| Tahir, Mukarram | 2015 | Wild, Stefan | Inverse optimization technique for targeted self-assembly of nanostructures |
| Trahan, Travis | 2010 | Smith, Michael | Application of Anisotropic Diffusion Tensor in 3-D and Implementation in DIF3D |
| Trifan, Anda | 2022 | Ramanathan, Arvind | Untitled |
| Trifan, Anda | 2021 | Ramanathan, Arvind | AI-enabled integration of Cryo-EM and multi-resolution simulations to understand the SARS-CoV-2replication-transcription complex machinery |
| Trifan, Anda | 2020 | Ramanathan, Arvind | Machine Learning/Artificial Intelligence for Molecular Dynamics simulations |
| Ulissi, Zachary | 2012 | Voth, Gregory | PU-Accelerated Coarse-Grained Simulations of Polymer-Nanotube Complexes |
| Wang, Gerald | 2015 | Gray, Stephen | Computational Studies on Inhomogeneous Surface Plasmon Polaritons in Metamaterials |
| Warlaumont, Anne | 2009 | Hereld, Mark | Systematic comparison of very different computational neuronal network models of epilepsy |
| Weiner, Zachary | 2018 | Heitmann, Katrin | Non-gaussianity in cosmological simulations |
| Wenny, Malia | 2019 | Lee, Byeongdu | Computational and Experimental Studies of Liquid Structure |
| Whiffen, Gregory | 1992 | Wright, Stephen | Untitled |
| Wild, Stefan | 2006 | More, Jorge | Optimization of simulation-based optimization problems with constraints on the computational budget |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Talwar, Shilpa | 1994 | Ayanoglu, Ender | Characterization of ARO/FEC Techniques for Wireless Indoor and Outdoor Mobile TDMA Channels |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Carbone, Matthew | 2018 | Yoo, Shinjae | The XANES Inverse Project |
| Ford Versypt, Ashlee | 2007 | Davenport, James | Molecular Dynamics Simulations of Benzene Binding to Glucose |
| Fox, Ryder | 2021 | Kollias, Pavlos | Variations in cloud radar signatures: CRSIM applied to an MC3E squall line model intercomparison |
| Isaacs, Eric | 2013 | Li, Yan | First-principles study of sub-nm Au clusters on CdS for photocatalytic hydrogen production |
| Lin, Milo | 2009 | Davenport, James | Quantum chemical Study of Crystalline Cellulose |
| Loving, Rebekah | 2021 | Yoo, Shinjae | Designing LSTMs to Learn and Characterize Chromatin Statuses |
| Mildon, Jezrielle | 2022 | Lewis, Ernie | Untitled |
| Richie-Halford, Adam | 2014 | Harrison, Robert | Improving inner product and gaxpy computations in MADNESS |
| Rudner, Mark | 2005 | Creutz, Michael | Explorations in Lattice Gauge Theory |
| Schroeder, Christopher | 2007 | Karsch, Frithjof | Supercomputing the Structure Function of the Quark-Gluon Plasma |
| Zundel, Lauren | 2021 | Hybertsen, Mark | Plasmon-Exciton Interactions with Periodic Arrays and 2D Semiconductors |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Smith, Steven | 1993 | Carpenter, John | Calculation of Transport Coefficients for Hard Chain Fluids by Equalibrium Molecular Dynamics |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Wei, Annie | 2019 | Mrenna, Stephen | Untitled |
| Wetherton, Blake | 2017 | Gnedin, Nickolay | Time-dependent star formation in ART |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Rattner, Alexander | 2012 | Post Guillen, Donna | Illustrative Visualization Techniques for Simulation Datasets |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Ali, Alnur | 2015 | Oh, Sang-Yun | High-dimensional variable selection and shrinkage in pseudolikelihood estimators of the inverse covariance matrix |
| Amarasingham, Asohan | 1999 | Rokhsar, Daniel | Computational Neuroscience of C. Elegans and Mammalian Retinal Ganglion Cells During Development |
| Barad, Michael | 2003 | Colella, Phillip | A Fourth Order Accurate Adaptive Mesh Refinement Method for Poisson's Equation |
| Baraldi, Robert | 2018 | Zahr, Matthew | An acceleration framework for parameter estimation using implicit sampling and adaptive |
| Baskerville, Edward | 2011 | Arkin, Adam | Model-based detection of interactions from time-series data |
| Berger, Casey | 2017 | Walker-Loud, Andre | Charged Pion Scattering with Massive QED |
| Blosch, Edwin | 1993 | Sethian, James | Parallel Computation using OVERFLOW: Overlapping Grid Navier-Stokes Flow Solver |
| Boettiger, Carl | 2010 | Arkin, Adam | Stochastic Population Dynamics in Structured Populations |
| Boffi, Nicholas | 2017 | Arkin, Adam | Dynamical Models of Biological Subtraction in Genetic Circuits |
| Brauer, Kaley | 2021 | Kasen, Daniel | Untitled |
| Bray, Jenelle | 2008 | Head-Gordon, Teresa | Calculation of Side Chain Conformational Entropy and the Discrimination of Native Protein Structures from Decoy Sets |
| Brederson, J. Dean | 1998 | Bethel, Edward | Implementation Issues in Haptic Visualization |
| Bremer, Maximilian | 2019 | Chan, Cy | Untitled |
| Bremer, Maximilian | 2016 | Chan, Cy | Dynamic Load Balancing for Storm Surge Applications |
| Byrne, Lindsey | 2021 | Lukic, Zarija | Simulating Supermassive Black Holes in Nyx |
| Cain, Madelyn | 2021 | Yang, Chao | Untitled |
| Calef, Brandoch | 1997 | Howells, Malcolm | Image Recovery Using Multiple Holograms |
| Carey, Christopher | 2006 | Colella, Phillip | Modeling Ideal MHD collimation from differential rotation using an upwinding scheme with adaptive mesh refinement |
| Caulin, Aleah | 2012 | Wang, Zhong | Solving 1,000 Puzzles with 8 Billion Small Pieces: Assembling Draft Genomes from the Cow Rumen Metagenome |
| Chi, Eric | 2009 | Spellman, Paul | A Comparison of Helicos and Illumina RNA-sequencing platforms |
| Chung, Julianne | 2007 | Yang, Chao | High Performance 3-D Image Reconstruction for Molecular Structure Determination |
| Clark, Scott | 2010 | Wang, Zhong | Exploration of Novel Parallel Algorithms for Short Read Assembly |
| Correa, Gabriela | 2018 | Ercius, Peter | Ultrafast Electron Detector Enabled by High Performance Computing |
| Danino, Tal | 2010 | Keasling, Jay | Driving biofuel production with a synthetic oscillator |
| Danino, Tal | 2008 | Keasling, Jay | Can yields of a biofuel candidate Isopentenol be increased using oscillatory promoters? |
| Davidovits, Seth | 2012 | Colella, Phillip | Accuracy checks of Chombo's mapped multiblock framework |
| DeVries, Phoebe | 2012 | Burgmann, Roland | Parallelizing three-dimensional viscoelastic models |
| Dewan, Leslie | 2011 | Bell, John | Simulation of Porous Media Flow in a Nuclear Waste Repository |
| Driscoll, Michael | 2003 | Arkin, Adam | Characterization of a Pulse-Generating Gene Circuit Using Quantitative Real-Time PCR |
| Eldred, Christopher | 2011 | Bell, John | Fluctuating Hydrodynamics |
| Epperly, Ethan | 2021 | Lin, Lin | Quantum Subspace Diagonalization |
| Fai, Thomas | 2011 | Bell, John | Low Mach Number Fluctuating Hydrodynamics |
| Fitz Axen, Margot | 2021 | Nugent, Peter | Modeling Superluminous Type 1a Supernovae |
| Foo, Jasmine | 2005 | Bell, John | Algorithm Refinement for the Stochastic Burgers' Equation |
| Friedman, Robin | 2008 | Doudna, Jennifer | Computational Analysis of CRISPR Mechanism, Function, and Evolution |
| Frogner, Charles | 2011 | Yang, Chao | Grouping molecules of similar orientation in single-molecule diffraction experiments |
| Girshick, Ahna | 2002 | Biegon, Anat | Untitled |
| Grauman, Kristen | 2003 | Parvin, Bahram | Automatic segmentation and labeling of images of different cell types |
| Guidi, John | 1995 | Zorn, Manfred | Integration of physical and genetic genome maps |
| Hardtke, Rellen | 2000 | Loken, Stewart | Project 1 (A) "Archiving the 1999 AMANDA Data Set" Project 2 (B) "Enlarging the Gamma-Ray Burst Sample for AMANDA" |
| Harris, Jalen | 2023 | Lin, Lin | Development and Implementation of Optimized PEXSI Algorithms for Twisted Bilayer Graphene Systems |
| Hayashi, Koby | 2022 | Buluç, Aydın | Untitled |
| Hayashi, Koby | 2021 | Buluç, Aydın | Randomized Sampling for Training Hypergraph Neural Networks |
| Hoffmann, Jordan | 2016 | Wang, Zhong | Spark Based Metagenome Assembler |
| Hu, Ying | 2009 | Schuc, James | Engineering gold nanostructures for surface-enhanced Raman spectroscopy |
| Hutchinson, Maxwell | 2012 | Prendergast, David | Shirley Compact Basis |
| Ingerman, Eugene | 1998 | Chorin, Alexandre | Numerical Experiments with Optimal Predictions Method |
| Jackson, Amber | 2005 | Bell, John | A Numerical Study of the Kelvin-Helmholtz Instability on Large Amplitude Internal Waves |
| Jacobson, Daniel | 2018 | Whitelam, Stephen | Direct evaluation of dynamical large-deviation rate functions using a variational ansatz |
| Jain, Anubhav | 2010 | Neaton, Jeff | Electronic structure calculations to screen solar PV materials |
| Johnson, Grant | 2023 | Lehe, Remi | Relativistic Fluid Modeling for Wake-Field Acceleration Plasmas in WarpX |
| Kane, Christopher | 2023 | Bauer, Christian | Untitled |
| Kane, Christopher | 2021 | Bauer, Christian | Simulating U(1) gauge theories using quantum computers |
| Kaplow, Irene | 2011 | Wang, Zhong | Developing a Fast Algorithm for Classifying Unknown Proteins |
| Karklin, Yan | 2003 | Holbrook, Stephen | Learning RNA Secondary Structure using Marginalized Kernels on Graphs |
| Keen, Benjamin | 2001 | Colella, Phillip | Implementing an embedded boundary algorithm for gas dymamics in EBChombo. |
| Kell, Alex | 2017 | Bouchard, Kristofer | Exploring methods to compress deep neural networks using union of intersections |
| Keller, Brenhin | 2014 | Waychunas, Glenn | Reactive force field modelling of silicate sorption on the hematite r-plane |
| Kohlstedt, Kevin | 2006 | Head-Gordon, Teresa | Quaternary structure and stability of glycine mutated Amyloid Beta fibrils |
| Kozak, Nikita | 2022 | Persson, Per-Olof | Advancing Free-Form Deformation for Aerodynamic Design |
| Krinos, Arianna | 2022 | Schulz, Frederik | Revisiting approaches for binning and taxonomic annotation of the coccolithophore Emiliania huxleyi in environmental samples |
| Krinos, Arianna | 2021 | Woyke, Tanja | Uncovering eukaryotes from a 20-year metagenomic time series from Lake Mendota |
| Lee, Curtis | 2013 | Johansen, Hans | Adaptive mesh refinement (AMR) and embedded boundaries (EB) in Chombo |
| Lee, Justin | 2013 | Parkinson, Dula | High-speed visualization of/interaction with ALS data for previewing algorithm parameter tweaks |
| Lemmon, Jack | 1993 | Budinger, Thomas | Examination of Image Reconstruction from Transmission Data |
| Leung, Mary Ann | 2002 | Canning, Andrew | Investigation of quantum well states in Copper-Cobalt thin films. |
| Lewis, Benjamin | 2004 | Eisen, Michael | Prediction of Regulatory Motifs Controlling the Expression and Processing of MicroRNA Genes in Drosophila |
| Lin, Yuexia | 2019 | Almgren, Ann | Using Reference Map Technique in AMReX to model microswimmers |
| Lin, Yuexia | 2018 | Almgren, Ann | Application of AMReX to an Eulerian method to simulate fluid-structure interactions |
| Liu, Eric | 2009 | Colella, Phillip | Overall group: Chombo my work: Artificial Viscosity for 4th order accurate Finite Volume Schemes |
| Macklin, Derek | 2014 | Wang, Zhong | FASTERp: A Feature Array Search Tool for Estimating Resemblance of protein sequences |
| Marganski, William | 1999 | Butler, Jamie | Measuring the Extensional Elasticity of the Red Blood Cell Using Micropipette Aspiration |
| Maskara, Nishad | 2022 | Neaton, Jeff | Proposal for near-term quantum simulation of strongly-correlated molecules with Rydberg Atom Arrays |
| Mason, Douglas | 2009 | Nugent, Peter | DeepSky |
| Mason, Kaishu | 2022 | Wang, Zhong | Estimating MAG Quality |
| McCue, Kayla | 2018 | Wang, Zhong | Genome Constellation |
| McKinnon, Ryan | 2015 | Nugent, Peter | "Automating Image Processing for Planet and TNO Searches in PTF" (unofficial) |
| Middleton, Sarah | 2014 | Wang, Zhong | Bidi: scalable bit-distance calculations using MPI + OpenCL |
| Miller, Scot | 2012 | Fung, Inez | High resolution global constraints on atmospheric carbon dioxide with a novel statistical framework |
| Miller, Scot | 2011 | Fung, Inez | Global constraints on atmospheric CO2 concentrations and CO2 sources |
| Minden, Victor | 2014 | Colella, Phillip | A convolutional free-space propagator for Maxwell's equations in free-space with application to PIC methods |
| Mintseris, Julian | 2003 | Eisen, Michael | Inference of Protein-DNA Binding Specificity From Structure |
| Moses, William | 2019 | de Jong, Wibe (Bert) | Learning Quantum Error Models |
| Musaelian, Albert | 2022 | de Jong, Wibe (Bert) | Kernel View of Quantum Machine Learning on Array Data |
| Netzloff, Heather | 2001 | Head-Gordon, Teresa | Parallelization of the Ewald Summation Method in Molecular Dynamics |
| Nichols, Laura | 2021 | Ushizima, Daniela | Multimodal analysis of plant root composition as a function of drought |
| Norgaard, Peter | 2007 | Colella, Phillip | Application of adaptive mesh refinement to particle-in-cell methods |
| Norman, Catherine | 2001 | Almgren, Ann | Modeling Multiphase Fluid Flow with Level Set Methods |
| Novak, Gregory | 2003 | White, Martin | Numerical Simulations of the Lyman Alpha Forest |
| Olson, Britton | 2009 | Colella, Phillip | Atmospheric Modeling using Chombo |
| Ozog, David | 2015 | Yelick, Kathy | A Hartree-Fock Application using UPC++ and the New DArray Library |
| Quist, Catherine | 2001 | Holbrook, Stephen | RNA Gene Finding In Eukaryote |
| Radhakrishnan, Mala | 2005 | Arkin, Adam | Towards a Mechanistic Model of Agonist-Induced Calcium Signaling in Macrophage Cells |
| Rager, Danielle | 2015 | Bouchard, Kristofer | Robust Estimation of Auditory Cortex Tuning and Connectivity |
| Richardson, Sarah | 2008 | Arkin, Adam | The Design of Orthogonal Components for a Transcription Attenuation System |
| Richers, Sherwood | 2013 | Kasen, Daniel | Monte Carlo Radiation Transport in Compact Binary Merger Disks |
| Riesselman, Adam | 2016 | Deutsch, Sam | Computational Optimization of Biosynthetic Gene Clusters |
| Ruths, Troy | 2011 | Arkin, Adam | Detecting genomic-level regulatory strategies in Shewanella MR-1 |
| Sealfon, Adam | 2015 | Buluç, Aydın | Parallel algorithms for maximum-cardinality high-weight graph matching |
| Sekora, Michael | 2007 | Colella, Phillip | Extremum-Preserving Limiters for the Piecewise Linear Method and Piecewise Parabolic Method |
| Sepanski, Benjamin | 2021 | Williams, Samuel | 6D Bricks: Extending the Bricks Data Layout for Near-Roofline Performance in High-Dimensional Application Code |
| Serre, Marc | 1997 | Sposito, Garrison | Using the Space Transformations to solve the Three Dimensional Flow Equation |
| Sim, Sukin | 2017 | McClean, Jarrod | Exploration of the Electronic Landscape |
| Smillie, Chris | 2013 | Arkin, Adam | Inferring the ecological niches of thousands of microbial species using synthetic ecosystems |
| Smith, Benjamin | 2007 | Szeto, Ernest | Automated Sorting of Large All Versus All BLAST Datasets |
| Stotsky, Jay | 2016 | Martin, Dan | Numerical Methods for the Drag-Coupled Particles in Viscous Flow |
| Strouse, Daniel | 2014 | Rokhsar, Daniel | Metagenomic Assembly by K-mer Histogram Peelback |
| Taylor, Timothy | 2023 | Collins, Bill | Extreme Events in a Data-Driven Deep Learning Weather Model: Fuzzy Verification and FourCastNet |
| Toms, Benjamin | 2018 | Prabhat, Mr. | Climate Science, Deep Learning, and Pattern Discovery: The Madden-Julian Oscillation as a Test Case |
| Torrance, Ellis | 2022 | Roux, Simon | Evolutionary Analysis of Prophage Genomes |
| Torrisi, Steven | 2018 | Persson, Kristin | Computational discovery of novel two-dimensional CO2 reduction photocatalysts |
| Triffo, William | 2005 | Auer, Manfred | Tomography of molecular machines central to mechanotransduction in hair cells |
| Tucker, Michael | 2019 | Aldering, Greg | SNIFS Software and Pipeline Upgrades |
| Turner, Alexander | 2016 | Cohen, Ronald | Network design for quantifying urban CO2 emissions: Assessing tradeoffs between precision and network density |
| Turner, Alexander | 2014 | Cohen, Ronald | Estimating urban carbon dioxide fluxes at high resolution from in situ observations |
| Vargas, Santiago | 2022 | Persson, Kristin | BarrierNet: Adapting Message Passing Neural Networks to Refine the Search for optimal reaction networks in Lithium Ion Battery Solid Electrolyte Interfaces |
| Velicanu, Dragos | 2014 | Luzum, Matthew | Hydrodynamic Simulations of high multiplicity proton proton collisions at a center of mass energy of 13 TeV |
| Vitousek, Sean | 2011 | Colella, Phillip | Modeling stratified tidal flow with adaptive mesh refinement |
| Waterfall, Joshua | 2003 | Rokhsar, Daniel | Polymorphisms in Ciona intestinalis |
| Weeber, Philip | 1995 | Narasimhan, T.N. | Slug Tests Under Saturated/Unsaturated Flow: A Richard's Equation Perspective |
| White, Cristina | 2018 | Ushizima, Daniela | Untitled |
| Whitter, Caitlin | 2021 | Tang, Yu-Hang | Molecular Dataset Summarization |
| Whitter, Caitlin | 2019 | Buluç, Aydın | Preconditioning Techniques for the Marginalized Graph Kernel |
| Wolf, Michael | 2004 | Ng, Esmond | Improving the Performance of the Scaled Matrix/Vector Multiplication with Vector Addition in Tau3P, an Electromagnetic Solver. |
| Wood, Brandon | 2005 | Moore, Joel | Transfer-matrix approach to phonon defect scattering in three-dimensional carbon structures with thermoelectric applications |
| Xu, Boyan | 2023 | Keasling, Jay | Untitled |
| Yang, Joy | 2016 | Arkin, Adam | Analysis of high throughput screens using CRISPRi and adapting CRISPRi for probing phage infections |
| Yeung, Melissa | 2013 | Morozov, Dmitriy | The Shape of Climate: Topological Data Analysis on Climate Data |
| Zahr, Matthew | 2012 | Persson, Per-Olof | Time Integration and Nonlinear Solvers for the Speedup of the Discontinuous Galerkin Finite Element Method |
| Zarakas, Claire | 2021 | Koven, Charles | Disentangling the Relative Impacts of Temperature and VPD on Tropical Forest GPP |
| Ziv, Etay | 2006 | Arkin, Adam | Stochastic modeling of HIV Tat-transactivation |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Adelman, Joshua | 2008 | Kuo, I-Feng William | Untitled |
| Adelman, Joshua | 2007 | Barsky, Daniel | Ring opening dynamics of the sliding DNA clamp PCNA |
| Andersen, Kristopher | 2004 | Pask, John | Locally-optimal methods to solve eigenvalue problems in electronic structure calculations |
| Anderson, Thomas | 2016 | Kolev, Tzanio | Algebraic Multigrid Preconditioners for High-order Finite Element solvers |
| Bailey, Teresa | 2004 | Zika, Michael | A Piecewise Linear Finite Element Discretization of the Diffusion Equation |
| Benage, Mary | 2011 | Belak, James | Molecular Dynamics concerning crystal growth in non-equilibrium flows including shear flow. |
| Blommel, Thomas | 2022 | Woodward, Carol | Untitled |
| Bose, Sanjeeb | 2011 | Schilling, Oleg | Modeling Mixing in Rayleigh-Taylor Instabilities |
| Bushick, Kyle | 2021 | Wood, Brandon | Data-driven approaches for interpretable NMR simulations: Probing local disorder in native oxide films on Ti |
| Butera, Jeffrey | 1995 | Ashby, Steve | A Portable and Parallel Code for Modeling Multiphase Flow |
| Bybee, Michael | 2005 | Trebotich, David | Particle Interactions in DNA-laden Flows |
| Chu, Kevin | 2004 | Trebotich, David | Incorporating Electrokinetic Effects into the EBNavierStokes Embedded Boundary Incompressible Fluid Solver |
| Cornille, Brian | 2017 | White, Daniel | Higher-Order Advection-Based Remap of Magnetic Fields in an Arbitrary Lagrangian-Eulerian Code |
| Crane, Nathan | 2001 | Quinlan, Dan | Overture:Object oriented tools for solving computational fluid dynamics and combustion problems in complex moving geometry. |
| Crane, Nathan | 2000 | Quinlan, Dan | Overture:Object oriented tools for solving computational fluid dynamics and combustion problems in complex moving geometry. |
| Crosswhite, Gregory | 2009 | DuBois, Jonathan | Looking for cats in bosonic flows |
| De Jong, Hannah | 2016 | Slezak, Tom | Detection of CRISPR genetic engineering in pathogen genomes |
| Dunn, Ian | 2016 | Fattebert, Jean-Luc | Energy conserving, linear scaling, real space first principles molecular dynamics. |
| Ebert, Julia | 2018 | Schneider, Michael | Collaborative Autonomy for Space Situational Awareness |
| Fago, Matt | 2002 | Rudd, Robert | Molecular dynamics study of plasticity and bending stiffness in thin films |
| Feather, Jenelle | 2018 | Thiagarajan, Jayaraman | Robust anomaly detection with GANs |
| Feldmann, Michael | 2000 | Galli, Giulia | Positronium wavefunctions in bulk solid |
| Fink, Stephen | 1995 | Rendleman, Charles | Flexible Communication Mechanisms for Block-Structured Applications |
| Frontiere, Nicholas | 2014 | Owen, John Michael | Reproducing Kernel Method Extensions to ASPH |
| Giamporcaro, Matthew | 1999 | Kamath, Chandrika | Large-Scale Data Mining & Pattern Recognition |
| Griffith, Boyce | 2003 | Hornung, Richard | Further Work on a Parallel, Adaptive Implementation of the Immersed Boundary Method using SAMRAI and PETSc |
| Griffith, Boyce | 2002 | Hornung, Richard | A Parallel, Adaptive Implementation of the Immersed Boundary Method using SAMRAI |
| Grimme, Eric | 1995 | Ashby, Steven | Linear System Solving in Lanczos-Based Model Reduction |
| Hafez, Omar | 2014 | Richards, David | Cardioid - a high-resolution computational model of the deforming heart |
| Hafez, Omar | 2013 | Stolken, James | Laser-Induced Plate Buckling |
| Hindman, Charles | 2000 | Pember, Rick | A Lagrangian Based Higher Order Godunov Scheme for the Euler Equations. |
| Hu, Ying | 2010 | White, Daniel | A coupled Maxwell-Schrodinger code to simulate the optical properties of nanostructures |
| Hunt, Jason | 2000 | Pember, Rick | Enhancing the embedded boundary capabilities of SAMRAI. |
| Hyde, Edward | 2000 | Dorr, Milo | The Validity of Paraxial Approximations in the Simulation of Laser-Plasma Interactions |
| Jasrasaria, Dipti | 2019 | Lordi, Vincenzo | Modeling physical origins of dephasing in open qubit systems |
| Kaufman, Jonas | 2019 | Wood, Brandon | Non-equilibrium properties of complex metal hydrides from molecular dynamics simulations |
| Kirkpatrick, Brent | 2005 | Escale Zhou, Carol | Clustering Proteins According to Structural Features |
| Kochanski, Kelly | 2018 | Rountree, Barry | Using high-performance computing to build a better model of self-organized snow |
| Koo, Justin | 2001 | Langdon, A. Bruce | Particle-In-Cell (PIC) methods have a long history in plasma simulation. |
| Lawson, Margaret | 2021 | Larsen, Matt | Automated Computational Steering Using Flexible In-Situ Triggers |
| Lewi, Jeremy | 2007 | Li, Mingkun | Identifying Genome Sequencing Problems Using Active Learning |
| Mandell, Noah | 2017 | Jiang, Ming | DRL4ALE: DRL Prediction of Expert Mesh Relaxation in ALE |
| Martin, Daniel | 1994 | Bell, John | An Adaptive Projection Method for Modeling Mesoscale Atmospheric Flows |
| Martin, Eileen | 2014 | Langer, Steve | Optimizing memory traffic in pF3D |
| McGrath, Matthew | 2005 | Mundy, Christopher | Ab initio Monte Carlo simulations of the vapor-liquid coexistance of water |
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| Name | Year | Practicum Supervisor | Practicum Title |
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| Gooding, William | 1992 | Truhler, Donald | Untitled |
| Name | Year | Practicum Supervisor | Practicum Title |
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| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
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| Name | Year | Practicum Supervisor | Practicum Title |
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| Beyer, Bonnie | 1993 | Pearlstein, Arne | Untitled |
| Name | Year | Practicum Supervisor | Practicum Title |
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| Name | Year | Practicum Supervisor | Practicum Title |
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| Xu, Boyan | 2021 | Jacobson, Daniel | Random walk with restart on gene networks |
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| ZuHone, John | 2006 | Messer, Bronson | Investigating Alternative Explosive Mechanisms for Type II Supernovae Using the FLASH Code |
| Name | Year | Practicum Supervisor | Practicum Title |
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| Aldridge, Bree | 2004 | Wiley, Steven | Integration of models TNF and EGF signaling pathways in HMEC cells |
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| Fox, Ryder | 2021 | Varble, Adam | Untitled |
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| Kilpatrick, Jeffrey | 2010 | Resat, Haluk | Genetic algorithm-based inference of protein-protein interactions |
| Lee, Seung | 2003 | Dixon, David | Computer Simulations of The Active Site of Ras/Raf |
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| Singh, Hansi | 2014 | Rasch, Phillip | Ocean Dynamics in the GeoMIP G1 Suite of GCM Simulations |
| Wiggs, James | 1992 | Lafemina, John | A Parallel Implementation of the Car-Parrinello Algorithm |
| Wilson, Amalee | 2021 | Gioiosa, Roberto | MLIR Dialect for Generic Dataflow |
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| Name | Year | Practicum Supervisor | Practicum Title |
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| Daughton, William | 1993 | Sugiyama, Linda | Users Manual for the TSC Code |
| DesJardin, Ian | 2022 | Tang, William | Deep Learning Based Surrogate Gyrokinetic Simulation |
| DesJardin, Ian | 2021 | Tang, William | Forecasting Tokamak Signals with Deep Learning Models |
| Felker, Kyle | 2016 | Tang, William | Machine Learning Applications to Predictive Studies of Disruptions in Tokamaks |
| Finkel, Hal | 2008 | Tang, William | Advanced Simulations of Plasma Microturbulence |
| Kates-Harbeck, Julian | 2016 | Tang, William | Disruption Forecasting in Tokamak Fusion Plasmas using Deep Recurrent Neural Networks |
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| Rodriguez, Jesse | 2021 | Tang, William | Integration of Electron Cyclotron Emission Imaging Data into the Fusion Recurrent Neural Network Disruption Prediction Model |
| Name | Year | Practicum Supervisor | Practicum Title |
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| Bender, Jason | 2015 | Najm, Habib | Disambiguation of data error and model error: new algorithms for uncertainty quantification |
| Bhattacharyya, Arnab | 2008 | Armstrong, Rob | Viewing Organic Behavior through the Lens of Computation |
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| Cleary, Emmet | 2017 | Chen, Jacqueline | Numerical Performance Evaluation of Asynchrony-Tolerant Finite Difference Schemes for Nonreacting and Reacting Flow Equations |
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| Dursi, Lewis | 2000 | Kerstein, Alan | Applying ODT to the Dredge-up Problem in Novae |
| Essig, Susanne | 1999 | Najm, Habib | Convergence Analysis and Troubleshooting of MPJet, a Low Mach Number Reacting Flow Code |
| Fischer, Robert | 1996 | Dean, Peter | Modelling the Dynamics of Computer Networks |
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| Hill, Judith | 2000 | Klein, Patrick | Co-Planar Crack Interaction in CLeaved Mica |
| Kellison, Ariel | 2021 | Hulette, Geoffrey | Formal Verification Methods for Symplectic Time Integration Schemes |
| Larsen, Brett | 2018 | Kolda, Tamara | Randomized Algorithms for Decomposing Sparse Tensors |
| Lindblad, Alex | 2005 | Ray, Jaideep | |
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| Lopes, Miles | 2012 | Kegelmeyer, Philip | Analysis of ensemble classification algorithms |
| Magann, Alicia | 2020 | Sarovar, Mohan | Lyapunov Control-Inspired Protocol for Quantum Optimization |
| Magann, Alicia | 2019 | Grace, Matthew | Digital quantum simulation of quantum optimal control |
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| Monsen, Erik | 1992 | Chen, Jacquelin | Direct numerical simulation (DNS) of turbulent combustion |
| Mysinger, Michael | 1997 | Melius, Carl | The Study of SiH2 Interacting with NH3 and PH3 Using the BAC-MP4 Method |
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| Rittner, John | 1992 | Foiles, Stephen | Untitled |
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| Sisto, Aaron | 2012 | Dedrick, Daniel | Systems Dynamics Analysis of Biomass to Energy Conversion |
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| Van der Ven, Anton | 1998 | Asta, Mark | Untitled |
| Williams, Alexander | 2016 | Kolda, Tamara | Dimensionality Reduction of Neural Data by Canonical Polyadic Tensor Decomposition |
| Name | Year | Practicum Supervisor | Practicum Title |
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| Ahrens, Willow | 2019 | Boman, Erik | Randomized Algorithms for Sparse Matrix Block Discovery. |
| Allen, Erik | 2005 | Crozier, Paul | Coarse-grained MD simulations of biomembrane phase transitions |
| Baker, Allison | 2001 | Lehoucq, Rich | "Defining linear problems for Trilinos" |
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| Balzer, Christopher | 2021 | Frischknecht, Amalie | Explicit Polarization in Ionomer Melts |
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| Bauman, Paul | 2004 | May, Rod | Modeling Impact Mechanics using PRESTO |
| Biddy, Mary | 2004 | Curro, John | Molecular Modeling of Triglycerides and Vegetable Oils |
| Cardona-Rivera, Rogelio | 2012 | Forsythe, James | Large Scale Conflict in Massively Multiplayer Online Games |
| Cochran, Kristine | 2003 | Burns, Shawn | Cellular Concrete Studies: Model Calibration and Simulation Results |
| Comer, James | 1993 | Tomkins, James | Simulation of Residual Oil Hydroprocessing Units on Massively Parallel Supercomputers |
| Conant, Gavin | 2001 | Heffelfinger, Grant | Untitled |
| Conley, William | 2005 | Howell, Stephen | Theoretical and Experimental Examination of the Dynamic Response of Carbon Nanotubes |
| Crawford, Zane | 2017 | Martin, Michael | Optimized Algorithm for High-efficiency Atom Transport |
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| Davis, Jimena | 2006 | May, Elebeoba | A Study of Computational Approaches for Parameter Estimation in the Escherichia coli K-12 Central Metabolic System |
| Evans, John | 2007 | Shadid, John | Variational Multiscale and Monotone Methods for Magnetohydrodynamics |
| Gage, Kenneth | 1999 | Schunk, Randy | The Use of Single Fiber Models for the Prediction of Novel Oxygenator Performance |
| Gentry, Sommer | 2003 | Ames, Arlo | Optimal robot base placement for automatic weld planning |
| Greminger, Michael | 2003 | Kozlowski, David | Real-Time Three-Dimensional Visualization of Standard Light Microscope Image Sequences |
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| Harris, Kristi | 2007 | Thompson, Aidan | Implementation of a particle migration application for the Stochastic Parallel PARticle Kinetic Simulator (SPPARKS) framework |
| Hehmeyer, Owen | 2004 | Stevens, Mark | Molecular dynamics simulations of grafted polyelectrolytes on apposing walls |
| Henry, Asegun | 2006 | Plimpton, Steven | Thermal Conductivity of Carbon Nanotubes Using Molecular Dynamics Simulations |
| Jenkins, Louis | 2021 | Viertel, Ryan | Demonstration for Domain Decomposed Parallel PDE Solver for Meshes |
| Kekenes-Huskey, Peter | 2005 | Crozier, Paul | Free energy profile of ion diffusion through silicate pores via WHAM |
| Ketcheson, David | 2007 | Loui, Hung (Jacques) | A Vector Finite-Element Implementation for Modeling Inhomogeneous Waveguides |
| Kirk, Benjamin | 2002 | MacKinnon, Robert | High-Order Positivity Preserving Algorithms for Transport Processes |
| Kopenhafer, Claire | 2019 | Mattsson, Thomas | Uncertainty Quantification on Ionization Models in 1D Kinetic Simulations |
| Lee, Eric | 2001 | Garcia, Pablo | Redundant Serial Manipulator Workspace Dexterity Design for Mobile Robot |
| Lee, Miler | 2007 | May, Elebeoba | Designing DNA biosensors for the detection of genetic variation |
| Lennon, Kyle | 2021 | Rajamanickam, Sivasankaran | Learning Transferable Neural Network Surrogates for Kohn-Sham Density Functional Theory |
| Levine, Brian | 2008 | Jones, Dean | Developing database tools to process data for use in large-scale airline optimization models |
| Lindsey, Jack | 2021 | Aimone, Brad | Models of Sequence Memory and Prediction Using On-chip Plasticity on Loihi |
| Martin, Marcus | 1998 | Heffelfinger, Grant | Gradient Driven Diffusion in Nanoporous Media |
| McNenly, Matthew | 2002 | Hermina, Wahid | Slip Model Accuracy in MEMS Flows |
| Moore, Quentarius | 2019 | Chandross, Michael | Predicting Tribochemically Induced Reactions of Two-Dimensional Materials |
| Moore, Quentarius | 2018 | Chandross, Michael | Thermomechanical Basis of Friction in MoS2 |
| Ortega, Mario | 2017 | Lorence, Len | Finite Element in Angle Charged Particle Transport |
| Parrish, Ian | 2005 | Mehlhorn, Thomas | Simulation of Z-pinches |
| Pascal, Tod | 2004 | Thompson, Aidan | Nonequilibrium molecular dynamics simulation of a large solute in charged nanopore |
| Payne, Christina | 2005 | Crozier, Paul | Molecular Dynamics Study of the Gating Mechanism of Synechococcus RuBisCO |
| Phillips, Carolyn | 2009 | Crozier, Paul | Applying the Two Temperature Model to Radiation Damage in an Amorphizing Material |
| Pribram-Jones, Aurora | 2013 | Desjarlais, Michael | Release Isentropes for Aluminum |
| Ralph, Claire | 2011 | Leung, Vitus | Subgraph Isomorphism for Multithreaded Architectures |
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| Sasson, Ariella | 2007 | Brown, W. Michael | Understanding Resveratrol, its stilbene derivatives and potential targets |
| Scepanovic, Danilo | 2009 | Glass, Robert | Biophysical basis for community-level infectious disease models |
| Schmidt, David | 2004 | May, Elebeoba | Finding the Code: Looking for Error Correcting Codes in the binding region of E.Coli mRNA (continuing the effort from the previous summer) |
| Schmidt, David | 2003 | May, Elebeoba | Finding the Code: Looking for Error Correcting Codes in the binding region of E.Coli mRNA |
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| Torchinsky, Jason | 2021 | Taylor, Mark | Improved Vertical Remap Accuracy |
| Trautner, Margaret | 2021 | Parekh, Ojas | Quantum dimension reduction |
| Uche, Obioma | 2004 | Crozier, Paul | Investigation of the Conformal Changes of Rubisco |
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| Zhang, Paul | 2019 | Mitchell, Scott | Singular graph editing for hex meshable singular graphs |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
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| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Strzelec, James | 1994 | Jackson, Ken | Testing Library Routines/Fortran90 Instrinsics |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Blommel, Thomas | 2021 | Devereaux, Tom | d-wave Superconductivity in the Hubbard-Extended Holstein Model |
| Holoien, Thomas | 2016 | Wechsler, Risa | Re-Sampling Observed Supernova/Host Galaxy Populations Using an XD Gaussian Mixture Model |
| Qi, Helena | 2017 | Martinez, Todd | Implementation of GPGPU-based algorithms for tensor hypercontraction |
| Roy, Lawrence | 2019 | Slaughter, Elliott | Improving High-level High Performance Computing in the Regent Programming Language |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Chapman, Jarrod | 2000 | Pande, Vijay | Folding@Home - distributed dynamics for protein folding |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Bazant, Martin | 1994 | Larson, Brond | Scalable Parallel Molecular Dynamics for Inhomogeneous Systems with Many-Body Forces |
| Name | Year | Practicum Supervisor | Practicum Title |
|---|---|---|---|
| Bringewatt, Jacob | 2019 | Sato, Nobuo | Confronting lattice parton densities with global QCD analysis |
| Cushman, Kimberly | 2020 | Edwards, Robert | Distillation for general field theories |