All Practicum Experiences by Location
| Year | Fellow | Practicum Title |
|---|---|---|
| Garcia, Michelle | Active Learning to Accelerate ABF Grid Sampling | |
| Gerhardinger, Mary | Constraining Early Dark Energy models with a power spectra emulator | |
| Meitz, Ethan | Generation and Validation of Intrinsically Disorder Protein Complexes from Diffusion Models | |
| Poteshman, Abigail | Trans-dimensional Bayesian model selection and parameter estimation for high-throughput characterization of spin defects in semiconductors | |
| Torsiello, Joseph | Machine Learning + Hybrid Monte Carlo (ML+HMC) Simulation in Lattice QCD | |
| Ganko, Krystian | Improving the hyperbolic partial differential equation (PDE)-constrained dynamic optimization of an oscillatory bioreactor using surrogate modeling | |
| Poteshman, Abigail | Automatic characterization of random spin baths in semiconductors | |
| Rangel DaCosta, Luis | Implementation of Selected Configuration Interaction Methods for Molecules and Solids with Integral-Driven Computations for Exascale Calculations | |
| Sahay, Rahul | Ergodicity at the Transition Between Non-Thermalizing Phases and Analog Routes to Quantum Error Correction | |
| Varner, Samuel | Application of Machine Learned Interatomic Potentials to Interfaces | |
| Davis, Marc | Mapping Circuits for Distributed Quantum Computing by Graph Partitioning | |
| Degleris, Anthony | Almost Indirect Methods for Constrained Optimization on the GPU | |
| Parmar, Shehan | Learning Interatomic Potentials using Symbolic Regression for Si-based Systems | |
| Perez Jr, Danilo | Machine learning-driven multiscale modeling of genomic evolution of SARS-CoV-2 | |
| Rangel DaCosta, Luis | Spectral Density Calculations for Solid Materials using Selected Configuration Interaction | |
| Trifan, Anda | Untitled | |
| Emmons, Scott | Reinforcement Learning for Retrosynthetic Pathway Planning | |
| Moses, William | Compiler Abstractions and Transformations for High Performance Parallel Computing | |
| Trifan, Anda | AI-enabled integration of Cryo-EM and multi-resolution simulations to understand the SARS-CoV-2replication-transcription complex machinery | |
| Baraldi, Robert | Guiding the Alternating Direction Method of Multipliers with Filters | |
| Trifan, Anda | Machine Learning/Artificial Intelligence for Molecular Dynamics simulations | |
| Elliott, Sarah | Untitled | |
| Sullivan, James | Neutrinos in HACC - Reducing noise in cosmological N-body simulations with neutrino particles | |
| Wenny, Malia | Computational and Experimental Studies of Liquid Structure | |
| Elliott, Sarah | Automated Thermochemistry and Kinetics for Combustion | |
| Kelley, Morgan | Optimization under uncertainty using chance constraints | |
| Ludwig, Thomas | Calculation of free energy profiles for reactions on metal surfaces using advanced sampling methods | |
| Rivera, Nicholas | Phonon bottlenecks in low dimensional materials | |
| Sahu, Amaresh | Using PETSc to parallelize finite element simulations of arbitrarily curved and deforming surfaces | |
| Weiner, Zachary | Non-gaussianity in cosmological simulations | |
| Castle, Sarah | Untitled | |
| Crabb, Emily | Computational Calculations of the Effects of Defects on HfO2 Properties | |
| Elliott, Sarah | Automated Thermochemistry for Combustion | |
| Kent, Carson | Nonlinear Robust Optimization | |
| Salcedo, Andres | Halo Occupation Distribution Modeling of RedMagic Galaxies | |
| Tahir, Mukarram | Inverse optimization technique for targeted self-assembly of nanostructures | |
| Wang, Gerald | Computational Studies on Inhomogeneous Surface Plasmon Polaritons in Metamaterials | |
| Blau, Samuel | Massively Parallelized Equation-Of-Motion Coupled Cluster Singles and Doubles (EOMCCSD) for Excited State Characterization | |
| Ozog, David | Performance Analysis of Full-Core Reactor Simulations on the Xeon Phi Architecture | |
| Plotkin, David | High Resolution Modeling of Tropical Cyclones | |
| Stine, Andrew | Metabolic Modeling of Trophic Interactions in Microbial Communities | |
| Lopez, Jesse | Enhancing scalability of the coastal ocean model SELFE | |
| Pelzer, Kenley | Applying DFT to the study of charge density effects in fullerene semiconductors | |
| Bender, Jason | p3calc: An efficient tool for calculating properties of potential energy surfaces for chemical kinetics | |
| Dsilva, Carmeline | Molecular Dynamics Simulations for Extracting Phase Field Model Parameters | |
| Ivey, Christopher | Parallelization and optimization of lattice-Boltzmann method | |
| Pelzer, Kenley | Conserving angular momentum in the master equation | |
| Ulissi, Zachary | PU-Accelerated Coarse-Grained Simulations of Polymer-Nanotube Complexes |
|
| Brorsen, Kurt | Fragment molecular orbital molecular dynamics on the BlueGene/P | |
| Gawlik, Evan | A Linearly Constrained Augmented Lagrangian Method for PDE-Constrained Optimization | |
| Matthews, Devin | Algorithms for Local and Parallel Structured Tensor Contractions | |
| Solomonik, Edgar | A framework for parallel symmetric tensor contractions | |
| Stripling, Hayes | Investigation of Scalable Adjoint Frameworks for Multi-physics Nuclear Reactor Simulations | |
| Fidkowski, Piotr | Investigating Hybrid Programming through Solid Mechanics | |
| Lockwood, Brian | Universal Gradient Enhanced Kriging Methods for Surrogate Modeling in Nuclear Engineering | |
| Trahan, Travis | Application of Anisotropic Diffusion Tensor in 3-D and Implementation in DIF3D | |
| Aksamija, Zlatan | Parallel Implementation of Charge and Thermal Transport Simulation in Carbon Nanotubes | |
| King, Kathleen | Approximate Dynamic Programing Models of Public Health Emergency Response | |
| Loriaux, Paul | Genome wide analysis of epigenetic features during development of Drosophila melanogaster. | |
| Warlaumont, Anne | Systematic comparison of very different computational neuronal network models of epilepsy | |
| Wild, Stefan | Optimization of simulation-based optimization problems with constraints on the computational budget |
|
| Rainey, Emma | Finite element model of mantle convection in icy satellites including grain size-dependent viscosity | |
| Fidkowski, Krzysztof | A Discontinuous Galerkin Method for the Incompressible Navier-Stokes Equations on Structured Meshes. | |
| Bardhan, Jaydeep | Developing a Full-scale Implementation of the Hessian-implicit Primal-dual Method | |
| Katz, Richard | Non-newtonian dynamics and thermal structure in subduction zones: applying the Portable Extensible Toolkit for Scientific Computing (PETSc) to a highly non-linear problem in CFD | |
| Horner, Daniel | Krylov Based Exponential Propagators | |
| Schofield, Samuel | Sediment Particle Dynamics | |
| Ng, Pauline | Variation in Metabolic Pathways | |
| Costello, John | Investigation of the suitability of WENO schemes for the Rayleigh-Taylor instability | |
| Goldmints, Larisa | Developing the Beam Element for Finite Element System Using Absolute Nodal Coordinate Formulation | |
| Barry, William | Implementation of Von Mises plasticity in SUMAA3D - a scalable unstructured mesh algorithms and applications package | |
| Bunch, Paul | A Simplex Based Primal-Dual Algorithm for Finding a Perfect Two-Matching in an Undirected Graph | |
| Krongauz, Yury | Untitled | |
| Jovanovic, Nickolas | Untitled | |
| Carlson, Kent | Performance Optimization and Parallelization of FANS-3D | |
| Czyzyk, Joseph | Untitled | |
| Epperly, Thomas | Untitled | |
| Whiffen, Gregory | Untitled |
| Year | Fellow | Practicum Title |
|---|---|---|
| Cao, Nina | Data Preparation for Future XAS Predictions with Neural Networks | |
| Oprescu, Miruna | Causal Effect Estimation for Spatio-Temporal Interventions | |
| Ravindra, Pavan | Machine Learning for X-Ray Absorption Spectroscopy | |
| Mildon, Jezrielle | Untitled | |
| Fox, Ryder | Variations in cloud radar signatures: CRSIM applied to an MC3E squall line model intercomparison | |
| Loving, Rebekah | Designing LSTMs to Learn and Characterize Chromatin Statuses | |
| Zundel, Lauren | Plasmon-Exciton Interactions with Periodic Arrays and 2D Semiconductors | |
| Carbone, Matthew | The XANES Inverse Project | |
| Richie-Halford, Adam | Improving inner product and gaxpy computations in MADNESS | |
| Isaacs, Eric | First-principles study of sub-nm Au clusters on CdS for photocatalytic hydrogen production | |
| Lin, Milo | Quantum chemical Study of Crystalline Cellulose | |
| Ford Versypt, Ashlee | Molecular Dynamics Simulations of Benzene Binding to Glucose | |
| Schroeder, Christopher | Supercomputing the Structure Function of the Quark-Gluon Plasma | |
| Rudner, Mark | Explorations in Lattice Gauge Theory |
| Year | Fellow | Practicum Title |
|---|---|---|
| Wei, Annie | Untitled | |
| Wetherton, Blake | Time-dependent star formation in ART |
| Year | Fellow | Practicum Title |
|---|---|---|
| Rattner, Alexander | Illustrative Visualization Techniques for Simulation Datasets |
| Year | Fellow | Practicum Title |
|---|---|---|
| Hagen, McKenzie | Untitled | |
| Barbeau, Zoe | Numerical Analysis and Acceleration of Particle-Particle Particle-Mesh Method using Cabana | |
| Bhan, Luke | Solving long horizon optimal control with distributed optimization and randomized numerical linear algebra. | |
| Bowden, Amanda | The Strength and Impacts of Atmospheric Rivers in the ERA5 & HENS using TempestExtremes | |
| Crisp, Ashlynn | Bayesian Variable Selection on Quantum Computers | |
| Daniels, Max | Physics-informed diagnostics: improving PINN performance with information-based model selection | |
| Hart, Emma | Flow Matching for Probabalistic Forecasting of Time Series | |
| Heras Rivera, Juampablo | Developing and evaluating deep learning segmentation models in the biological and medical domain. | |
| Hofgard, Elyssa | Application of Topological Data Analysis to Amorphous Materials | |
| Ju, Caleb | Randomized preconditioning based on approximate range deflation | |
| Keegan, Katherine | Distributed Subgraph GNN Training with Local Graph Clustering |
|
| Lu, Kerri | Watermarking scientific data | |
| O'Meally, Franz | Multiphase Modeling of Cohesive Particle-Laden Flows | |
| Sakarvadia, Mansi | Mitigating Memorization In Language Models | |
| Ye, Joel | Patterns of generalization in pretrained neural data models. | |
| Attia, Lucas | Inverse Design of Upconverting Nanoparticles via Deep Learning on Physics-Infused Heterogeneous Graphs |
|
| Beckman, Paul | Butterfly factorization from matrix-vector products | |
| Bennewitz, Elizabeth | Probabilistic Noise Conversion for Simulating Open Quantum Systems | |
| Cowherd, Marianne | Surface snow properties at the SAIL site | |
| Ganguly, Ishani | Reinforcement Learning for De Novo Molecule Design in Photovoltaic Cell Applications | |
| Hagen, McKenzie | Evaluating Methods of Calculating Connectivity from Functional MRI | |
| Harris, Jalen | Development and Implementation of Optimized PEXSI Algorithms for Twisted Bilayer Graphene Systems | |
| Johnson, Alexander | Load Balancing Nyx Cosmological Code | |
| Johnson, Grant | Relativistic Fluid Modeling for Wake-Field Acceleration Plasmas in WarpX | |
| Kane, Christopher | Untitled | |
| Liu, Jerry | Does In-Context Operator Learning Generalize to Domain-Shifted Settings? | |
| Parmar, Shehan | Learning Polarizable Force Field Parameters for Ionic Liquids using Graph-Neural Networks | |
| Reilly, Sonia | Iterative Phasing with Noise Projection for Fluctuation X-Ray Scattering | |
| Taylor, Timothy | Extreme Events in a Data-Driven Deep Learning Weather Model: Fuzzy Verification and FourCastNet | |
| Wei, Julia | Disentangling order-4 tensors using Riemannian optimization | |
| Xu, Boyan | Untitled | |
| Barbeau, Zoe | Adaptive Remapping for PIC Methods | |
| Barker, Bryn | Fluctuating Hydrodynamics and the Rayleigh-Plateau Instability | |
| Hayashi, Koby | Untitled | |
| Kazeem, Olorundamilola | TBD: Exploration into Quantum Speech Processing using Quantum Pixel Representations and Compression for Keyword Recognition | |
| Kozak, Nikita | Advancing Free-Form Deformation for Aerodynamic Design | |
| Krinos, Arianna | Revisiting approaches for binning and taxonomic annotation of the coccolithophore Emiliania huxleyi in environmental samples | |
| Maskara, Nishad | Proposal for near-term quantum simulation of strongly-correlated molecules with Rydberg Atom Arrays | |
| Mason, Kaishu | Estimating MAG Quality | |
| Musaelian, Albert | Kernel View of Quantum Machine Learning on Array Data | |
| Poteshman, Abigail | Method development for high-throughput polarization calculations | |
| Torrance, Ellis | Evolutionary Analysis of Prophage Genomes | |
| Vargas, Santiago | BarrierNet: Adapting Message Passing Neural Networks to Refine the Search for optimal reaction networks in Lithium Ion Battery Solid Electrolyte Interfaces | |
| Brauer, Kaley | Untitled | |
| Byrne, Lindsey | Simulating Supermassive Black Holes in Nyx | |
| Cain, Madelyn | Untitled | |
| Epperly, Ethan | Quantum Subspace Diagonalization | |
| Fitz Axen, Margot | Modeling Superluminous Type 1a Supernovae | |
| Hayashi, Koby | Randomized Sampling for Training Hypergraph Neural Networks | |
| Krinos, Arianna | Uncovering eukaryotes from a 20-year metagenomic time series from Lake Mendota | |
| Sepanski, Benjamin | 6D Bricks: Extending the Bricks Data Layout for Near-Roofline Performance in High-Dimensional Application Code | |
| Whitter, Caitlin | Molecular Dataset Summarization | |
| Zarakas, Claire | Disentangling the Relative Impacts of Temperature and VPD on Tropical Forest GPP | |
| Kane, Christopher | Simulating U(1) gauge theories using quantum computers | |
| Nichols, Laura | Multimodal analysis of plant root composition as a function of drought | |
| Bremer, Maximilian | Untitled | |
| Lin, Yuexia | Using Reference Map Technique in AMReX to model microswimmers | |
| Moses, William | Learning Quantum Error Models | |
| Tucker, Michael | SNIFS Software and Pipeline Upgrades | |
| Whitter, Caitlin | Preconditioning Techniques for the Marginalized Graph Kernel | |
| Baraldi, Robert | An acceleration framework for parameter estimation using implicit sampling and adaptive | |
| Correa, Gabriela | Ultrafast Electron Detector Enabled by High Performance Computing | |
| Jacobson, Daniel | Direct evaluation of dynamical large-deviation rate functions using a variational ansatz | |
| Lin, Yuexia | Application of AMReX to an Eulerian method to simulate fluid-structure interactions | |
| McCue, Kayla | Genome Constellation | |
| Toms, Benjamin | Climate Science, Deep Learning, and Pattern Discovery: The Madden-Julian Oscillation as a Test Case | |
| Torrisi, Steven | Computational discovery of novel two-dimensional CO2 reduction photocatalysts | |
| White, Cristina | Untitled | |
| Berger, Casey | Charged Pion Scattering with Massive QED | |
| Boffi, Nicholas | Dynamical Models of Biological Subtraction in Genetic Circuits | |
| Kell, Alex | Exploring methods to compress deep neural networks using union of intersections | |
| Sim, Sukin | Exploration of the Electronic Landscape | |
| Bremer, Maximilian | Dynamic Load Balancing for Storm Surge Applications | |
| Hoffmann, Jordan | Spark Based Metagenome Assembler | |
| Riesselman, Adam | Computational Optimization of Biosynthetic Gene Clusters | |
| Stotsky, Jay | Numerical Methods for the Drag-Coupled Particles in Viscous Flow | |
| Turner, Alexander | Network design for quantifying urban CO2 emissions: Assessing tradeoffs between precision and network density | |
| Yang, Joy | Analysis of high throughput screens using CRISPRi and adapting CRISPRi for probing phage infections | |
| Ali, Alnur | High-dimensional variable selection and shrinkage in pseudolikelihood estimators of the inverse covariance matrix | |
| McKinnon, Ryan | "Automating Image Processing for Planet and TNO Searches in PTF" (unofficial) | |
| Ozog, David | A Hartree-Fock Application using UPC++ and the New DArray Library | |
| Rager, Danielle | Robust Estimation of Auditory Cortex Tuning and Connectivity | |
| Sealfon, Adam | Parallel algorithms for maximum-cardinality high-weight graph matching | |
| Keller, Brenhin | Reactive force field modelling of silicate sorption on the hematite r-plane | |
| Macklin, Derek | FASTERp: A Feature Array Search Tool for Estimating Resemblance of protein sequences | |
| Middleton, Sarah | Bidi: scalable bit-distance calculations using MPI + OpenCL | |
| Minden, Victor | A convolutional free-space propagator for Maxwell's equations in free-space with application to PIC methods | |
| Strouse, Daniel | Metagenomic Assembly by K-mer Histogram Peelback | |
| Turner, Alexander | Estimating urban carbon dioxide fluxes at high resolution from in situ observations | |
| Velicanu, Dragos | Hydrodynamic Simulations of high multiplicity proton proton collisions at a center of mass energy of 13 TeV | |
| Lee, Curtis | Adaptive mesh refinement (AMR) and embedded boundaries (EB) in Chombo | |
| Lee, Justin | High-speed visualization of/interaction with ALS data for previewing algorithm parameter tweaks | |
| Richers, Sherwood | Monte Carlo Radiation Transport in Compact Binary Merger Disks | |
| Smillie, Chris | Inferring the ecological niches of thousands of microbial species using synthetic ecosystems | |
| Yeung, Melissa | The Shape of Climate: Topological Data Analysis on Climate Data | |
| Caulin, Aleah | Solving 1,000 Puzzles with 8 Billion Small Pieces: Assembling Draft Genomes from the Cow Rumen Metagenome | |
| Davidovits, Seth | Accuracy checks of Chombo's mapped multiblock framework | |
| DeVries, Phoebe | Parallelizing three-dimensional viscoelastic models | |
| Hutchinson, Maxwell | Shirley Compact Basis | |
| Miller, Scot | High resolution global constraints on atmospheric carbon dioxide with a novel statistical framework | |
| Zahr, Matthew | Time Integration and Nonlinear Solvers for the Speedup of the Discontinuous Galerkin Finite Element Method | |
| Baskerville, Edward | Model-based detection of interactions from time-series data | |
| Dewan, Leslie | Simulation of Porous Media Flow in a Nuclear Waste Repository | |
| Eldred, Christopher | Fluctuating Hydrodynamics | |
| Fai, Thomas | Low Mach Number Fluctuating Hydrodynamics | |
| Frogner, Charles | Grouping molecules of similar orientation in single-molecule diffraction experiments | |
| Kaplow, Irene | Developing a Fast Algorithm for Classifying Unknown Proteins | |
| Miller, Scot | Global constraints on atmospheric CO2 concentrations and CO2 sources | |
| Ruths, Troy | Detecting genomic-level regulatory strategies in Shewanella MR-1 | |
| Vitousek, Sean | Modeling stratified tidal flow with adaptive mesh refinement | |
| Boettiger, Carl | Stochastic Population Dynamics in Structured Populations | |
| Clark, Scott | Exploration of Novel Parallel Algorithms for Short Read Assembly | |
| Danino, Tal | Driving biofuel production with a synthetic oscillator | |
| Jain, Anubhav | Electronic structure calculations to screen solar PV materials | |
| Chi, Eric | A Comparison of Helicos and Illumina RNA-sequencing platforms | |
| Danino, Tal | Can yields of a biofuel candidate Isopentenol be increased using oscillatory promoters? | |
| Hu, Ying | Engineering gold nanostructures for surface-enhanced Raman spectroscopy | |
| Liu, Eric | Overall group: Chombo my work: Artificial Viscosity for 4th order accurate Finite Volume Schemes |
|
| Mason, Douglas | DeepSky | |
| Olson, Britton | Atmospheric Modeling using Chombo | |
| Bray, Jenelle | Calculation of Side Chain Conformational Entropy and the Discrimination of Native Protein Structures from Decoy Sets | |
| Friedman, Robin | Computational Analysis of CRISPR Mechanism, Function, and Evolution | |
| Richardson, Sarah | The Design of Orthogonal Components for a Transcription Attenuation System | |
| Chung, Julianne | High Performance 3-D Image Reconstruction for Molecular Structure Determination | |
| Norgaard, Peter | Application of adaptive mesh refinement to particle-in-cell methods | |
| Sekora, Michael | Extremum-Preserving Limiters for the Piecewise Linear Method and Piecewise Parabolic Method | |
| Smith, Benjamin | Automated Sorting of Large All Versus All BLAST Datasets | |
| Carey, Christopher | Modeling Ideal MHD collimation from differential rotation using an upwinding scheme with adaptive mesh refinement | |
| Kohlstedt, Kevin | Quaternary structure and stability of glycine mutated Amyloid Beta fibrils | |
| Ziv, Etay | Stochastic modeling of HIV Tat-transactivation | |
| Foo, Jasmine | Algorithm Refinement for the Stochastic Burgers' Equation | |
| Jackson, Amber | A Numerical Study of the Kelvin-Helmholtz Instability on Large Amplitude Internal Waves | |
| Radhakrishnan, Mala | Towards a Mechanistic Model of Agonist-Induced Calcium Signaling in Macrophage Cells | |
| Triffo, William | Tomography of molecular machines central to mechanotransduction in hair cells | |
| Wood, Brandon | Transfer-matrix approach to phonon defect scattering in three-dimensional carbon structures with thermoelectric applications | |
| Lewis, Benjamin | Prediction of Regulatory Motifs Controlling the Expression and Processing of MicroRNA Genes in Drosophila | |
| Wolf, Michael | Improving the Performance of the Scaled Matrix/Vector Multiplication with Vector Addition in Tau3P, an Electromagnetic Solver. | |
| Barad, Michael | A Fourth Order Accurate Adaptive Mesh Refinement Method for Poisson's Equation | |
| Driscoll, Michael | Characterization of a Pulse-Generating Gene Circuit Using Quantitative Real-Time PCR | |
| Grauman, Kristen | Automatic segmentation and labeling of images of different cell types | |
| Karklin, Yan | Learning RNA Secondary Structure using Marginalized Kernels on Graphs | |
| Mintseris, Julian | Inference of Protein-DNA Binding Specificity From Structure | |
| Novak, Gregory | Numerical Simulations of the Lyman Alpha Forest |
|
| Waterfall, Joshua | Polymorphisms in Ciona intestinalis | |
| Girshick, Ahna | Untitled | |
| Leung, Mary Ann | Investigation of quantum well states in Copper-Cobalt thin films. | |
| Keen, Benjamin | Implementing an embedded boundary algorithm for gas dymamics in EBChombo. | |
| Netzloff, Heather | Parallelization of the Ewald Summation Method in Molecular Dynamics | |
| Norman, Catherine | Modeling Multiphase Fluid Flow with Level Set Methods | |
| Quist, Catherine | RNA Gene Finding In Eukaryote | |
| Hardtke, Rellen | Project 1 (A) "Archiving the 1999 AMANDA Data Set" Project 2 (B) "Enlarging the Gamma-Ray Burst Sample for AMANDA" | |
| Amarasingham, Asohan | Computational Neuroscience of C. Elegans and Mammalian Retinal Ganglion Cells During Development | |
| Marganski, William | Measuring the Extensional Elasticity of the Red Blood Cell Using Micropipette Aspiration | |
| Brederson, J. Dean | Implementation Issues in Haptic Visualization | |
| Ingerman, Eugene | Numerical Experiments with Optimal Predictions Method | |
| Calef, Brandoch | Image Recovery Using Multiple Holograms | |
| Serre, Marc | Using the Space Transformations to solve the Three Dimensional Flow Equation | |
| Guidi, John | Integration of physical and genetic genome maps | |
| Weeber, Philip | Slug Tests Under Saturated/Unsaturated Flow: A Richard's Equation Perspective | |
| Blosch, Edwin | Parallel Computation using OVERFLOW: Overlapping Grid Navier-Stokes Flow Solver | |
| Lemmon, Jack | Examination of Image Reconstruction from Transmission Data |
| Year | Fellow | Practicum Title |
|---|---|---|
| Dravid, Amil | Extracting and Aligning Knowledge from Foundation Models | |
| Ito, Michael | Protective host Targeted Engineered CRISPR-Cas Therapeutics (PROTECT) | |
| Majeau, Fiona | Exploring the Suitability of Interpolation-Based Discrete Event Handling for Inclusion into SUNDIALS | |
| Paige, Jennifer | Automated Calibration of the Simple Cloud-Resolving E3SM Atmosphere Model (SCREAM) | |
| Zendejas Lopez, Victor | An investigation of the shock-driven RM (Richtmyer-Meshkov) instability under reshock conditions | |
| Barker, Bryn | Adding a Wall Model to MIRANDA's Turbulence Library | |
| Brown, Lucy | Accelerating Computations with Radial Basis Functions in MFEM with Tensor Decompositions | |
| Espinosa, Zachary | Could recent cooling in the East Pacific be due to natural variability? | |
| Fernandes, Joshua | A physics-based model of permanent set in solid network polymeric materials | |
| Zendejas Lopez, Victor | Towards a RANS turbulence capability in Marbl for shock-driven Richtmyer-Meshkov instabilities | |
| Blommel, Thomas | Untitled | |
| Porter, Justin | Developing Algorithms for Thermal-Mechanical Time Integration | |
| Bushick, Kyle | Data-driven approaches for interpretable NMR simulations: Probing local disorder in native oxide films on Ti | |
| Lawson, Margaret | Automated Computational Steering Using Flexible In-Situ Triggers | |
| Moore, Guy | Development and benchmarking of a massively parallel phase-field model for the study of diffusionless phase transitions in polycrystalline materials | |
| Olivier, Samuel | Moment Methods for Thermal Radiative Transfer | |
| Olivier, Samuel | Variable Eddington Factor Method for Thermal Radiative Transfer | |
| Jasrasaria, Dipti | Modeling physical origins of dephasing in open qubit systems | |
| Kaufman, Jonas | Non-equilibrium properties of complex metal hydrides from molecular dynamics simulations | |
| Ebert, Julia | Collaborative Autonomy for Space Situational Awareness | |
| Feather, Jenelle | Robust anomaly detection with GANs | |
| Kochanski, Kelly | Using high-performance computing to build a better model of self-organized snow | |
| Ochs, Ian | Four Dimensional Continuum Kinetic Modeling of Magnetized Plasmas | |
| Ortega, Mario | A Rayleigh Quotient Method for Criticality Eigenvalue Problems in Neutron Transport | |
| Cornille, Brian | Higher-Order Advection-Based Remap of Magnetic Fields in an Arbitrary Lagrangian-Eulerian Code | |
| Mandell, Noah | DRL4ALE: DRL Prediction of Expert Mesh Relaxation in ALE | |
| Anderson, Thomas | Algebraic Multigrid Preconditioners for High-order Finite Element solvers | |
| De Jong, Hannah | Detection of CRISPR genetic engineering in pathogen genomes | |
| Dunn, Ian | Energy conserving, linear scaling, real space first principles molecular dynamics. | |
| Frontiere, Nicholas | Reproducing Kernel Method Extensions to ASPH | |
| Hafez, Omar | Cardioid - a high-resolution computational model of the deforming heart | |
| Martin, Eileen | Optimizing memory traffic in pF3D | |
| Rey, Daniel | Analysis of energy transfer between spatial scales in a turbulent, coaxial jet | |
| Hafez, Omar | Laser-Induced Plate Buckling | |
| Sisto, Aaron | High-density additively manufactured parts using integrated data mining and simulation | |
| Parrish, Robert | Rank Reduction Methods in Nuclear Structure Theory | |
| Rubenstein, Brenda | Constant Pressure Quantum Monte Carlo for the Study of Hydrogen at High Pressures | |
| Solomonik, Edgar | Design of numerical linear algebra kernels for QBox (DFT) | |
| Benage, Mary | Molecular Dynamics concerning crystal growth in non-equilibrium flows including shear flow. | |
| Bose, Sanjeeb | Modeling Mixing in Rayleigh-Taylor Instabilities | |
| Randles, Amanda | Plasma Transport Coefficients for Molecular Dynamics Simulations |
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| Rubenstein, Brenda | A Constant Pressure Quantum Algorithm for Exploring the Hydrogen Phase Diagram at High Pressures | |
| Trahan, Travis | A Modified Treatment of Sources in Implicit Monte Carlo Radiation Transport | |
| Hu, Ying | A coupled Maxwell-Schrodinger code to simulate the optical properties of nanostructures | |
| Olson, Britton | Hydrodynamic analysis of LIFE (Laser Inertial Fusion Engine) | |
| Stripling, Hayes | Uncertainty Quantification Strategic Initiative (UQSI): A pipeline for model ensemble selection. | |
| Crosswhite, Gregory | Looking for cats in bosonic flows | |
| Nir, Oaz | Untitled | |
| Adelman, Joshua | Untitled | |
| Rodriguez, Alejandro | Ab-initio simulation of heavy-metal azide detonations under shocks | |
| Adelman, Joshua | Ring opening dynamics of the sliding DNA clamp PCNA | |
| Lewi, Jeremy | Identifying Genome Sequencing Problems Using Active Learning | |
| Bybee, Michael | Particle Interactions in DNA-laden Flows | |
| Kirkpatrick, Brent | Clustering Proteins According to Structural Features | |
| McGrath, Matthew | Ab initio Monte Carlo simulations of the vapor-liquid coexistance of water | |
| Moussa, Sarah | Untitled | |
| Andersen, Kristopher | Locally-optimal methods to solve eigenvalue problems in electronic structure calculations | |
| Bailey, Teresa | A Piecewise Linear Finite Element Discretization of the Diffusion Equation | |
| Chu, Kevin | Incorporating Electrokinetic Effects into the EBNavierStokes Embedded Boundary Incompressible Fluid Solver |
|
| Taylor, Brian | Computation of Cellular Detonation | |
| Griffith, Boyce | Further Work on a Parallel, Adaptive Implementation of the Immersed Boundary Method using SAMRAI and PETSc | |
| Fago, Matt | Molecular dynamics study of plasticity and bending stiffness in thin films |
|
| Griffith, Boyce | A Parallel, Adaptive Implementation of the Immersed Boundary Method using SAMRAI | |
| Newren, Elijah | Utilizing the SAMRAI framework to write adaptive mesh refinement, distributed memory, parallel PDE solvers |
|
| Crane, Nathan | Overture:Object oriented tools for solving computational fluid dynamics and combustion problems in complex moving geometry. | |
| Koo, Justin | Particle-In-Cell (PIC) methods have a long history in plasma simulation. | |
| Nguyen, Diem-Phuong | Modeling Chemical Kinetics in Turbulent Combustion Simulations Using Overture | |
| Sedgewick, Robert | Numerical Simulation of the Multi-band Hubbard Model | |
| Crane, Nathan | Overture:Object oriented tools for solving computational fluid dynamics and combustion problems in complex moving geometry. | |
| Feldmann, Michael | Positronium wavefunctions in bulk solid | |
| Hindman, Charles | A Lagrangian Based Higher Order Godunov Scheme for the Euler Equations. | |
| Hunt, Jason | Enhancing the embedded boundary capabilities of SAMRAI. | |
| Hyde, Edward | The Validity of Paraxial Approximations in the Simulation of Laser-Plasma Interactions | |
| Nguyen, Diem-Phuong | Coupling Reaction Models in Overture for CFD simulations involving complex geometry. | |
| Oehmen, Christopher | 2D and 3D models of a rabbit sinoatrial node cell using Overture and CVODE. | |
| Giamporcaro, Matthew | Large-Scale Data Mining & Pattern Recognition | |
| Butera, Jeffrey | A Portable and Parallel Code for Modeling Multiphase Flow | |
| Fink, Stephen | Flexible Communication Mechanisms for Block-Structured Applications | |
| Grimme, Eric | Linear System Solving in Lanczos-Based Model Reduction | |
| Postma, Todd | Completion and Benchmarking of the GT-SCALE Code | |
| Martin, Daniel | An Adaptive Projection Method for Modeling Mesoscale Atmospheric Flows | |
| Propp, Rick | Modeling a Fixed Bed Reactor | |
| Parriott, Joel | Implications of Asymmetric Mass Loss on the Number of Comets Around Other Single Stars | |
| Simpson Pierce, Elsie | Untitled |
| Year | Fellow | Practicum Title |
|---|---|---|
| Andalman, Zachary | Thunderstorm: Relativistic Electron Transport in Kilonovae Ejecta | |
| Dula Razzolini, Isabella | Using WRF to study convectively generated gravity waves | |
| Fajen, Otto | Shadow Excited State Molecular Dynamics | |
| Kitson, Joy | Exploring the Interplay Between Disease and Fear Spread in an Agent-Based Epidemic Simulation | |
| Krasowska, David | Task-Based Programming for Processing in Memory HPC Clusters | |
| Larson, McKenzie | The Impact of Vertical Coordinates on Ice Shelf Cavity Simulations in MPAS-Ocean | |
| Lee, Brandon | Acceleration of Nonthermal Plasmas by Magnetic Reconnection | |
| Schmidgall, Carlyn | Unraveling the controls on Arctic Ocean salinity stratification through E3SM-Arctic tracer release experiments | |
| Shafer, Courtney | Importance of ice-shelf cavities when parameterizing ice-shelf melting from ocean temperature in projections of the Antarctic Ice Sheet | |
| Tynes, Michael | Untitled | |
| Asher, Olivia | Who Lives in a Spore? | |
| Filippova, Nina | Mapping magnetic fields in star-forming regions with deep learning | |
| Pagane, Nicole | Building viral-immune models to better understand HIV control post-ART | |
| Shafer, Courtney | Evaluation of modeled subglacial discharge from the Antarctic Ice Sheet to the Southern Ocean | |
| Tynes, Michael | Using Large Language Models to Understand Online Narratives | |
| Asher, Olivia | Optimizing Enzymes for Digesting Plastics | |
| Casabona, Gabriel | Neutron Star Crust Tracking in Dynamical Spacetime | |
| Rogers, David | Hydrologic simulations of agricultural tile drainage using Advanced Terrestrial Simulator (ATS) | |
| Stetzler, Steven | Untitled | |
| Baumgart, Alexandra | Directionally-unsplit hydrodynamics solver for the astrophysics code LEAFS | |
| Ezzell, Nicholas | Variational algorithms for quantum computers of today and the future | |
| Greer, Sarah | Seismic inverse analysis with automatic differentiation and a variational autoencoder | |
| Johnson, Grant | Particle transport and acceleration in magnetic reconnection | |
| Lalor, Peter | Nuclear Material Inference as an Inverse Problem | |
| Miles, Cole | Su(N)ny: Fast and easy generalized spin simulations for arbitrary Hamiltonians | |
| Stetzler, Steven | Fast Emulation of Expensive Simulations using Approximate Gaussian Processes | |
| Greer, Sarah | Physics-informed machine learning for seismic inversion | |
| Kreher, Miriam | Generic and flexible cross-section generation tool | |
| Kunka, Logan | Detailed Kinetics Model for Condensed-Phase Reactive Materials | |
| Finkel, Justin | Data-driven nonparametric optimization of an ocean turbulence model | |
| Fromm, Steven | Developing a General-Relativistic Smoothed Particle Hydrodynamics Code for Simulating Neutron Star Mergers | |
| Greer, Sarah | Solving a hydrologic inverse problem with a quantum annealer | |
| Hebert, Claire-Alice | Emulation and calibration of Mars Rover spectra for surface composition analysis | |
| Katsevich, Anya | Dynamic stability of microgrids under fluctuating power production and consumption levels | |
| Moran, Kelly | Untitled | |
| Olivier, Samuel | Fully Local Quasidiffusion | |
| Brady, Riley | Detecting CO2 hot spots in the Southern Ocean | |
| Hebert, Claire-Alice | Emulation for ChemCam Data Analysis | |
| Kreher, Miriam | Accelerating Time-Dependent Monte Carlo Algorithms with Explicit Delayed Neutron Precursors | |
| Moran, Kelly | Modular emulation and calibration using Hamiltonian Monte Carlo sampling in Stan in the context of dynamic compression experiments | |
| Wetherton, Blake | A kinetic model for electron heating in antiparallel magnetic reconnection | |
| Kochanski, Kelly | Snow on Sea Ice in the ACME climate model | |
| Marks, Sean | Accelerating molecular simulations of lipid bilayers | |
| Moran, Kelly | Speeding up the scientific process at experimental x-ray facilities through the use of Gaussian process emulators | |
| Watkins, Laura | Extending Accelerated MD methods to soft-matter systems | |
| Weichman, Kathleen | Stability of pick-up ion distributions in the outer heliosheath | |
| Hammer, Morgan | Code Interfacing for Practical Implementation of the Coupled Wavepackets Algorithm for Nonadiabatic Dynamics | |
| Krishnapriyan, Aditi | Optimization of Parameterizations for Density Functional Tight Binding Theory using Machine Learning | |
| Weichman, Kathleen | Cold atmospheric plasma-based electrostatic disruption of bacteria and cancer cells | |
| Catanach, Tommie | Power System Estimation | |
| Lubin, Miles | Chance constrained optimal power flow | |
| Crocker, Britni | Task-based dictionary learning using neural networks | |
| Till, Andrew | Linear-Multi-Frequency-Grey Preconditioning for Radiative Transfer Sn Calculations | |
| McClean, Jarrod | Electronic descriptors for the prediction of photovoltaic properties of polymers | |
| Maienschein-Cline, Mark | Using Chemical and Structural Features to Predict Transcription Factor Binding Sites | |
| Yao, Norman | Dynamics of the Quantum Phase Transition in the Mixed Field Ising Model | |
| Isaac, Tobin | Ice Sheet Model Integration | |
| Omar, Cyrus | cl.egans: A high-performance spiking neural network simulation package | |
| Clark, Scott | Velvetrope: an algorithm for rapidly finding local alignments between a sequence of interest (SOI) and multiple test sequences. |
|
| Rubenstein, Brenda | Comparative Monte Carlo Efficiency by Monte Carlo Analysis | |
| Hamilton, Steven | Negative Flux Fixups for Discontinuous Finite Element SN Transport | |
| Aksamija, Zlatan | Wavelet Transform techniques in Multigrid and Asynchronous Fast Adaptive Composite (AFAC) algorithms | |
| Atlas, Jordan | Comparison of a Rule-Based and a Traditional Pathway Model of a Signal Transduction System | |
| Berrill, Mark | Adaptive Mesh Refinement for Modeling Magneto-Hydrodynamic Plasmas | |
| Coon, Ethan | Multilevel upscaling for multiphase porous flow. | |
| Drocco, Jeffrey | Modeling genetic regulation as a highly canalized boolean network | |
| Markowitz, David | Parameter Estimation in a Kinetic Model of the marRAB Operon in Eschericia coli | |
| Davidson, Gregory | Accurate and Robust Monte Carlo-Diffusion Interfaces | |
| Wollaber, Allan | A Hybrid Monte Carlo-Deterministic Transport Method for Efficient Global Transport Solutions | |
| Bou-Rabee, Nawaf | Geometric Monodromy & Variational Integrators | |
| Dunlop, Mary | Robustness in Genetic Circuits: Clustering of Functional Responses | |
| Stechmann, Samuel | Singular Solutions to a Partial Differential Equation for Computer Imaging | |
| Carstens, Nathan | Developing an Efficient Algorithm for Parallel MCNPX Kcode Calculations | |
| Mills, Richard | Development of an object-oriented, parallel, fully-implicit, finite-volume code for modeling multi-phase subsurface flows | |
| Morgan, Nathaniel | Numerical Modeling of Binary Solidification | |
| Wu, Michael | Extension of the "Data Dependent Hypothesis Classes" framework to Regression Problems. |
|
| Alvarez, Marcelo | SPH Code Validation and Addition of Particle Splitting | |
| Evangelisti, Annette | Method for modeling receptor-ligand interaction without a specified aggregation length. | |
| Gebhart, Nouvelle | Investigation of Excited States of fac-Rhenium Tris Carbonyl Complexes Through DFT and TDDFT calculations | |
| Hanshaw, Heath | Construction of Adaptive Mesh Transport Discretizations that Meet the Thick Diffusion Limit | |
| Noah-Vanhoucke, Joyce | Quasi-chemical Approximation Applied to an Oil/Water/Surfactant System. | |
| Anderson, Matthew | Untitled | |
| Elliott, Ryan | Coarse Grained Models of Deformation and Phase Transitions | |
| Hammond, Glenn | Parallel Reactive Transport Modeling Using the PETSc Library | |
| Worden, Lee | Modeling of HIV Quasispecies Dynamics and Treatment Strategies | |
| Wilkening, Jon | Multigrid on an Irregular Domain | |
| Dolbow, John | Geometrically Conforming Weight Functions in MLSPH Moving Least Squares Particle Hydrodynamics (MLSPH) | |
| Farthing, Matthew | AMRH | |
| Fringer, Oliver | Integrable vs. Nonintegrable Geodesic Soliton Behavior | |
| Trujillo, Mario | Untitled | |
| Hittinger, Jeffrey | Development of a Code for the P-1 Equations of Radiation Hydrodynamics Currently | |
| Tokman, Mayya | Magnetohydrodynamic Modelling using PPMA Framework | |
| Zoldi, Scott | Long-time Simulations of Large-Aspect-Ratio Reaction-Diffusion Systems | |
| Falk, Michael | Dynamic Fracture Investigations in 2D Brittle Amorphous Systems via Massively Parallel Computation | |
| Parker, Steven | Visualization of Large Scale Models Using the SCIRun Environment SCIRun | |
| Phillips, James | Effects of Constraints on Transition Rates in a Model System | |
| Stanley, Scott | Object Oriented Software for PDEs using Overlapping Grids and Serial and Parallel Array Classes for Scientific Computation in C++ | |
| Haney, Jeff | Untitled | |
| Hogenson, Gordon | The Dynamics of Collapse of a Cavitation Bubble near a Boundary | |
| Chao, Edward | Gyrokinetic Plasma Simulations using Object Oriented ProgrammingGyrokinetic theory | |
| Germann, Timothy | Grand Challenge Molecular Dynamics Researchers in T-11 (Statistical Physics and Condensed Matter Theory) | |
| Nielsen, Debra | Untitled | |
| Wyckoff, Pete | Topological Characterization of the Strange Attractor of Low-Dimensional Chaotic Systems. | |
| DiBattista, Mark | Composable Finite Difference Algorithms for Vector Operators | |
| Hagberg, Aric | Untitled | |
| Humphrey, William | The Numerical Tokamak Grand Challenge | |
| Ropp, David | Long-Time Models for Ocean Circulation Oceans | |
| Williford, Eric | Spectral Shallow Water Equations Modelling: Comparisons between Serial and Parallel Computing | |
| McLaughlin, Richard | Untitled |
| Year | Fellow | Practicum Title |
|---|---|---|
| Abdulah, Daniel | Adaptive computing: macroscale surrogate modeling with on-the-fly training from microscale simulations | |
| Anderson, Christopher | Traffic Forecasting at DFW | |
| Lechowicz, Adam | Distribution Grid Incentive Design with Unknown Agent Behavior | |
| Mata, Storm | Wind Profile Reconstruction in the Atmospheric Boundary Layer with Conditional Diffusion Models | |
| Melendez-Rivera, Joshua | Controlling activity, selectivity, and stability of (photo)electrocatalysts via tuning of the fermi-level by mechanical strain and applied potential | |
| Rasmussen, Melissa | Extending Fluid-Structure Interaction Codes for Floating Photovoltaic Arrays | |
| de Jong, Emily | Mechanisms of low level jet formation in the US Mid-Atlantic | |
| Pash, Graham | Equipping Neural Network Surrogates with Uncertainty for Propagation in Physical Systems | |
| Porter, Justin | 2D Stall-/Vortex-Induced Vibration Modeling | |
| Wei, Grace | Bottom-up Construction of Kinetic Monte Carlo Model for Perovskite Growth | |
| Adcock, Christiane | Untitled | |
| Bharadwaj, Vivek | Recursive Butterfly Transforms for Accelerated ILDL | |
| Eiden, Kiran | Co-Optimized Machine-Learned Manifolds for Combustion Applications | |
| Jones, Gabrielle | Improving Communication and Workload Management in BerkeleyGW | |
| Kerr, Madeleine | Hydrogen combustion leading points and flame curvature. | |
| LaPorte, Mary | Algae Orthology Inference Pipeline | |
| Pash, Graham | Toward Uncertainty Propagation for Data-Driven Closure Models | |
| Adcock, Christiane | Model Predictive Control with Q-learning for Building Control | |
| Ju, Caleb | Decomposition methods for long duration energy storage | |
| Toriyama, Michael | Improving the Thermostability of MHETase Using Molecular Dynamics Simulations | |
| Cushman, Kimberly | Untitled | |
| de Jong, Emily | Understanding Low Level Jets in the US Mid-Atlantic Offshore and their Impacts on Turbines | |
| Hull, Olivia | "Developing a State-by-State Understanding of Polarizability with the GW Approximation" | |
| Johnson, K. Grace | Machine Learning to Enable Chemically Informative Atomistic Simulation in Complex Environments | |
| Queen, Melissa | Visualizing Dallas/Fort Worth Airport models and simulations | |
| Donti, Priya | Matrix Completion for Low-Observability Voltage Estimation | |
| Kamdar, Harshil | PREDICTING CRYSTAL BAND GAPS USING MESSAGE PASSING NEURAL NETWORKS | |
| Barnes, Richard | Distributed Algorithms to Avoid Tragedies of the Commons in Smart Meter Collectives | |
| Egan, Hilary | Power Prediction and Scheduling | |
| Harris, Chelsea | Simulating Heliostat Degradation for Concentrated Solar Power | |
| Mayes, Heather | Radical Understanding of Lignin Biosynthesis | |
| Vermaas, Joshua | Studies of Oxidized Cellulose Decrystalization and Binding Affinity |
| Year | Fellow | Practicum Title |
|---|---|---|
| Davidson, Gregory | Linear Characteristics Methods on Rectangular Geometry |
| Year | Fellow | Practicum Title |
|---|---|---|
| Maginot, Peter | High fidelity multiphysics simulation of a nuclear reactor casualty |
| Year | Fellow | Practicum Title |
|---|---|---|
| Adams, Caleb | Modeling fire effects on soil carbon | |
| Chambliss, Amelia | Transient stability of fusion power plants on the electric grid | |
| Keller, Abigail | Optimizing microhydropower installation in the Qualla Boundary | |
| Abdulah, Daniel | Increasing the maximum stable step with empirical Runge-Kutta schemes | |
| Ballow, Alexandra | Mode Connectivity of QCBMs when Fitting the 5 qubit 1D Cluster State | |
| Burns, Jackson | QuantumScents: Quantum-Mechanical Properties for 3.5k Olfactory Molecules | |
| Ballow, Alexandra | Is Mode Connectivity Explainable by LOCC Equivalence | |
| Kitson, Joy | Advancing understanding of sub-seasonal scale land-atmosphere-ocean processes that influence compound heat and drought extremes. | |
| Robey, Rachel | Investigating Infinite Sound Speed Approximations for Cloud Models | |
| Xu, Boyan | Random walk with restart on gene networks | |
| Brady, Riley | Untitled | |
| Coulter, Jennifer | A QMC+DFT Study of the Volume Collapse Phase Transition in MnS2 | |
| Hutter, Edward | On developing accurate and robust krylov methods for matrix product states | |
| Silmore, Kevin | Dynamics of Charged Polymers | |
| Toms, Benjamin | Untitled | |
| Norman, Kari | A computational approach to biodiversity change: does function follow richness? | |
| Klion, Hannah | Optimizing FLASH Multipole Gravity for Exascale | |
| Alexander, Kathleen | Grain boundary stability and Li-ion diffusion across grain boundaries in lithium lanthanum titante | |
| Thompson, Thomas | Taskloaf: A library for simplifying distributed task parallelism | |
| Vermaas, Joshua | Petascale Simulations of Lignin, Cellulose, and Cellulases | |
| Loos, Sarah | Verification of Quantum Analog Digital (QuAD) Systems | |
| Smedsmo, Jamie | The sustainability of cellulosic biofuel crop produciton in a changing climate | |
| Stershic, Andrew | Use of Multi-sphere method to build discrete element model of granular materials from tomographic imagery | |
| Donatelli, Jeffrey | Numerical Solution of PDE's with Evolving Boundaries in a High Order Multiresolution Framework | |
| Skillman, Samuel | High Performance Stencil Computations on GPUs | |
| Sutter, Paul | Preparing the FLASH code for large-scale simulation | |
| Perkins, Alex | A conditional-strategy model accounts for spatiotemporal life-history variation in Snake River fall Chinook salmon |
|
| Hykes, Joshua | Isotopic depletion in three-dimensional neutron transport | |
| Norman, Matthew | Vertical Sensitivity Fix for CAM Shallow Moist Convective Parameterization Scheme | |
| Reuter, Matthew | Electrostatics and Electrodynamics with Multiresolution Methods | |
| Sutter, Paul | A performance-based load balancing scheme for MADNESS | |
| Deslippe, Jack | Computational Studies of Polymers for Photovoltaics and Solid-State Lighing | |
| Ziegler, John Lewis | Modeling the Diffusive Effects of Shock and Detonation wave Reflections | |
| Cookson, Natalie | Discovery of Gene Circuit Architecture from Noise Correlations |
|
| Rogers, David | BIO014: Next generation simulations in biology | |
| ZuHone, John | Investigating Alternative Explosive Mechanisms for Type II Supernovae Using the FLASH Code | |
| Bailey, Teresa | Mass Lumping in CENTRM | |
| Potere, David | Support of the LandScan Population Mapping Project | |
| Wolinsky, Matthew | Analysis of Soil Moisture in the CCSM2 global climate model | |
| Andersen, Kristopher | Electronic structure, methods and applications: Solving a sparse generalized eigenvalue problem and permalloy. | |
| Ismail, Ahmed | Spatial and temporal coarse-graining techniques for molecular simulations | |
| Kowalok, Michael | A Critical Examination of the Practicality of Adjoint Monte Carlo Transport for External Beam Radiation Therapy Inverse Treatment Planning | |
| Wick, Collin | Computational Science at the Terascale | |
| Glass, Kevin | Parallelizing Fish Population Models | |
| Graves, Corey | Use of Wavelet Theory to Study Turbulent Transport in Fusion Reaction | |
| Gerlach, Charles | A Modified Eight-node Crack-tip Element | |
| Held, Eric | Model for Coherent Modes in Tokomak Discharges with Weak Negative Central Shear | |
| Surati, Rajeev | Characterization of Effect of Loading of Power Supplies on Injection Plugs on Laboratory Microchip | |
| Khatri, Sven | Stabilization Using Artificial Neural Networks | |
| Moore, Brian | Development of a Higher Order Polynomial Nodal Code in Cylindrical Geometry | |
| Penland, Chris | Error Analysis of the Nodal Expansion Method in One Dimensional Cartesian Geometry | |
| Duncan, Amanda | 1-GHz Correlation Processor for Single-Bit Data | |
| Lundy, Christie | Untitled | |
| Richardson, Clifton | Electron Self-energy in Simple Metals |
| Year | Fellow | Practicum Title |
|---|---|---|
| Maxson, Tristan | Development of Second-Generation Car-Parrinello Datasets for Machine Learning Interatomic Potentials of Aqueous Solutions with Ions | |
| White, Sienna | How is surface salinity in the Puget Sound affected by atmospheric rivers? | |
| Williams, Emily | Machine-learning-based spectral methods for reduced-order modeling | |
| Ghosh, Souradip | End-to-End Agile Hardware Generation for Sparse Tensor Workloads | |
| Cowherd, Marianne | Snow drought characteristics in E3SM | |
| Fox, Ryder | Untitled | |
| Wilson, Steven | Protonation of Serine in Gas and Condensed and Microsolvated States in Aqueous Solution | |
| Rader, Jamin | Emulation of warm rain processes using deep neural networks | |
| Wilson, Amalee | MLIR Dialect for Generic Dataflow | |
| Singh, Hansi | Ocean Dynamics in the GeoMIP G1 Suite of GCM Simulations | |
| Kilpatrick, Jeffrey | Genetic algorithm-based inference of protein-protein interactions | |
| Hammond, Jeff | Implementation of coupled-cluster linear response theory for molecular properties within NWChem | |
| Aldridge, Bree | Integration of models TNF and EGF signaling pathways in HMEC cells | |
| Singh, Amoolya | Microarray analysis of a crp regulatory mutant of Shewanella oneidensis | |
| Lee, Seung | Computer Simulations of The Active Site of Ras/Raf | |
| Gesh, Christopher | Evaluation of a Variety of Chemistry-transport Coupling Methods for Geochemical Groundwater Transport | |
| Liden, Lars | Odor Classification with Fuzzy ARTMAP | |
| Ford, Gregory | Untitled | |
| Wiggs, James | A Parallel Implementation of the Car-Parrinello Algorithm |
| Year | Fellow | Practicum Title |
|---|---|---|
| Gomez, Juan | Transformers for multi-scale time-series classification and application to disruption prediction in fusion devices | |
| Gade Jr, Thomas | Verification of low-n resistive tearing mode physics in the electromagnetic X-point Gyrokinetic Code (XGC) | |
| Gomez, Juan | Transformers for multi-scale time-series classification and application to disruption prediction in fusion devices | |
| DesJardin, Ian | Deep Learning Based Surrogate Gyrokinetic Simulation | |
| DesJardin, Ian | Forecasting Tokamak Signals with Deep Learning Models | |
| Rodriguez, Jesse | Integration of Electron Cyclotron Emission Imaging Data into the Fusion Recurrent Neural Network Disruption Prediction Model | |
| Felker, Kyle | Machine Learning Applications to Predictive Studies of Disruptions in Tokamaks | |
| Kates-Harbeck, Julian | Disruption Forecasting in Tokamak Fusion Plasmas using Deep Recurrent Neural Networks | |
| Reddell, Noah | Energetic particle affects on tokomak stability using continuum kinetic method implemented on many-core machines | |
| Kherlopian, Armen | Effects of Noise and Attention on Memory Learning | |
| Finkel, Hal | Advanced Simulations of Plasma Microturbulence | |
| Kepner, Jeremy | Gyrokinetic Simulations on the Cray T3D | |
| Daughton, William | Users Manual for the TSC Code |
| Year | Fellow | Practicum Title |
|---|---|---|
| Kellison, Ariel | Formal Verification Methods for Symplectic Time Integration Schemes | |
| Magann, Alicia | Lyapunov Control-Inspired Protocol for Quantum Optimization | |
| Magann, Alicia | Digital quantum simulation of quantum optimal control | |
| Larsen, Brett | Randomized Algorithms for Decomposing Sparse Tensors | |
| Cleary, Emmet | Numerical Performance Evaluation of Asynchrony-Tolerant Finite Difference Schemes for Nonreacting and Reacting Flow Equations | |
| Sanders, Clay | Data-Driven Approach to Modeling Material Uncertainty in Additively Manufactured Materials | |
| Williams, Alexander | Dimensionality Reduction of Neural Data by Canonical Polyadic Tensor Decomposition | |
| Bender, Jason | Disambiguation of data error and model error: new algorithms for uncertainty quantification | |
| Rosario, Michael | Creating a geometry-dependent volume meshing algorithm for use in an automated mesh resolution study | |
| Lopes, Miles | Analysis of ensemble classification algorithms | |
| Quinn, Christopher | Efficiently Inferring Optimal and Near-Optimal Approximations for Large Stochastic Dynamical Systems |
|
| Sisto, Aaron | Systems Dynamics Analysis of Biomass to Energy Conversion | |
| Chi, Eric | Untitled | |
| Chi, Eric | Making tensor factorizations robust against non-Gaussian noise | |
| Hamman, Curtis | Modeling Variable-Density Turbulence in One-Dimension | |
| Sonday, Benjamin | Investigation of the intrusive polynomial chaos eigenstructure of random dynamical systems | |
| Bhattacharyya, Arnab | Viewing Organic Behavior through the Lens of Computation | |
| Martin, James | Dimensionality reduction for large scale uncertainty quantification | |
| Oxberry, Geoffrey | Analysis and Reduction of Chemical Models Under Uncertainty | |
| Lindblad, Alex | ||
| Cummings, Aron | Electronic nature of looped carbon nanotubes | |
| Lindblad, Alex | Towards the Understanding of Silicon Micro-Needle Failure in a Biological MEMS Device | |
| McDermott, Randall | Application of One-Dimensional Turbulence (ODT) to Large Eddy Simulation Bulk Flow Closure | |
| Rinderspacher, Christopher | Finite Elements in Hartree-Fock Theory | |
| Dursi, Lewis | Applying ODT to the Dredge-up Problem in Novae | |
| Hill, Judith | Co-Planar Crack Interaction in CLeaved Mica | |
| Essig, Susanne | Convergence Analysis and Troubleshooting of MPJet, a Low Mach Number Reacting Flow Code | |
| Van der Ven, Anton | Untitled | |
| Mysinger, Michael | The Study of SiH2 Interacting with NH3 and PH3 Using the BAC-MP4 Method | |
| Fischer, Robert | Modelling the Dynamics of Computer Networks | |
| Monsen, Erik | Direct numerical simulation (DNS) of turbulent combustion | |
| Rittner, John | Untitled |
| Year | Fellow | Practicum Title |
|---|---|---|
| Rios, Gabriel | Evaluating the accuracy of the Zhang-MacFarlane deep convective parameterization in the grey zone of a global atmospheric model | |
| Rodriguez, Paulina | Multi-metric Validation Assessment for Small Sample Validation Experiment Dataset | |
| Rodriguez, Paulina | Uncertainty Quantification and Sensitivity Analysis for Hypersonic Analysis | |
| Balzer, Christopher | Explicit Polarization in Ionomer Melts | |
| Lennon, Kyle | Learning Transferable Neural Network Surrogates for Kohn-Sham Density Functional Theory | |
| Lindsey, Jack | Models of Sequence Memory and Prediction Using On-chip Plasticity on Loihi | |
| Torchinsky, Jason | Improved Vertical Remap Accuracy | |
| Trautner, Margaret | Quantum dimension reduction | |
| Jenkins, Louis | Demonstration for Domain Decomposed Parallel PDE Solver for Meshes | |
| Ahrens, Willow | Randomized Algorithms for Sparse Matrix Block Discovery. | |
| Kopenhafer, Claire | Uncertainty Quantification on Ionization Models in 1D Kinetic Simulations | |
| Moore, Quentarius | Predicting Tribochemically Induced Reactions of Two-Dimensional Materials | |
| Zhang, Paul | Singular graph editing for hex meshable singular graphs | |
| Moore, Quentarius | Thermomechanical Basis of Friction in MoS2 | |
| Crawford, Zane | Optimized Algorithm for High-efficiency Atom Transport | |
| Ortega, Mario | Finite Element in Angle Charged Particle Transport | |
| Pribram-Jones, Aurora | Release Isentropes for Aluminum | |
| Cardona-Rivera, Rogelio | Large Scale Conflict in Massively Multiplayer Online Games | |
| Ralph, Claire | Subgraph Isomorphism for Multithreaded Architectures | |
| Ralph, Claire | Subgraph Isomorphism Algorithms for Multithreaded Architectures | |
| Phillips, Carolyn | Applying the Two Temperature Model to Radiation Damage in an Amorphizing Material | |
| Scepanovic, Danilo | Biophysical basis for community-level infectious disease models | |
| Talischi, Cameron | Explicit multiscale time integrator for transient dynamic simulations | |
| Levine, Brian | Developing database tools to process data for use in large-scale airline optimization models | |
| Evans, John | Variational Multiscale and Monotone Methods for Magnetohydrodynamics | |
| Harris, Kristi | Implementation of a particle migration application for the Stochastic Parallel PARticle Kinetic Simulator (SPPARKS) framework | |
| Ketcheson, David | A Vector Finite-Element Implementation for Modeling Inhomogeneous Waveguides | |
| Lee, Miler | Designing DNA biosensors for the detection of genetic variation | |
| Sasson, Ariella | Understanding Resveratrol, its stilbene derivatives and potential targets | |
| Davis, Jimena | A Study of Computational Approaches for Parameter Estimation in the Escherichia coli K-12 Central Metabolic System | |
| Henry, Asegun | Thermal Conductivity of Carbon Nanotubes Using Molecular Dynamics Simulations | |
| Wolf, Michael | Characterization of Distributed Micro-releases of Pathogens | |
| Allen, Erik | Coarse-grained MD simulations of biomembrane phase transitions | |
| Conley, William | Theoretical and Experimental Examination of the Dynamic Response of Carbon Nanotubes | |
| Kekenes-Huskey, Peter | Free energy profile of ion diffusion through silicate pores via WHAM | |
| Parrish, Ian | Simulation of Z-pinches | |
| Payne, Christina | Molecular Dynamics Study of the Gating Mechanism of Synechococcus RuBisCO | |
| Veilleux, Michael | Applying Spatially Varying Material Strengths to Simulate High-Rate Fragmentation of Armor-Grade Ceramics | |
| Bauman, Paul | Modeling Impact Mechanics using PRESTO | |
| Biddy, Mary | Molecular Modeling of Triglycerides and Vegetable Oils | |
| Hehmeyer, Owen | Molecular dynamics simulations of grafted polyelectrolytes on apposing walls | |
| Pascal, Tod | Nonequilibrium molecular dynamics simulation of a large solute in charged nanopore | |
| Schmidt, David | Finding the Code: Looking for Error Correcting Codes in the binding region of E.Coli mRNA (continuing the effort from the previous summer) | |
| Schofield, Samuel | ||
| Uche, Obioma | Investigation of the Conformal Changes of Rubisco | |
| Cochran, Kristine | Cellular Concrete Studies: Model Calibration and Simulation Results | |
| Gentry, Sommer | Optimal robot base placement for automatic weld planning | |
| Greminger, Michael | Real-Time Three-Dimensional Visualization of Standard Light Microscope Image Sequences | |
| Schmidt, David | Finding the Code: Looking for Error Correcting Codes in the binding region of E.Coli mRNA | |
| Kirk, Benjamin | High-Order Positivity Preserving Algorithms for Transport Processes | |
| McNenly, Matthew | Slip Model Accuracy in MEMS Flows | |
| Baker, Allison | "Defining linear problems for Trilinos" | |
| Balkcom, Devin | Untitled | |
| Conant, Gavin | Untitled | |
| Lee, Eric | Redundant Serial Manipulator Workspace Dexterity Design for Mobile Robot | |
| Gage, Kenneth | The Use of Single Fiber Models for the Prediction of Novel Oxygenator Performance | |
| Martin, Marcus | Gradient Driven Diffusion in Nanoporous Media | |
| Venkataramani, Rajesh | Connecting Gas Phase and Surface Problems in Modeling CVD Reactors | |
| Sirman, Melinda | Implementation of CUERVO on the IBMSP2 | |
| Zeeb, Charles | Untitled | |
| Gunney, Brian | Upwind Leap-Frog Scheme on Massively Parallel Message Passing Computers | |
| Comer, James | Simulation of Residual Oil Hydroprocessing Units on Massively Parallel Supercomputers | |
| Cronen-Townsend, Stephen | Modelling Toroidal Solder Drop | |
| Swiler, Laura | Optimization of Reliability Models Under Uncertainty | |
| Barragy, Edward | Untitled |
| Year | Fellow | Practicum Title |
|---|---|---|
| Blommel, Thomas | d-wave Superconductivity in the Hubbard-Extended Holstein Model | |
| Roy, Lawrence | Improving High-level High Performance Computing in the Regent Programming Language | |
| Qi, Helena | Implementation of GPGPU-based algorithms for tensor hypercontraction | |
| Holoien, Thomas | Re-Sampling Observed Supernova/Host Galaxy Populations Using an XD Gaussian Mixture Model |
| Year | Fellow | Practicum Title |
|---|---|---|
| Cushman, Kimberly | Distillation for general field theories | |
| Bringewatt, Jacob | Confronting lattice parton densities with global QCD analysis |